Alei052539.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069434.1:2234989-2235795[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.6e-10 2.8e-08 36.0 0.0 3 39 17 53 16 58 0.91
Sequence Information
- Coding Sequence
- ATGGTGCGTAACTACATCAAAAAGAGAAATCGCCCTGATATTccaaaagatgatttaaaaaaatctattaaagctGTGCTCAATCGCCAAATGTCGATTCGCATGGCTGCAAGCACTTTCAATATCCCAAAATCAACTCTTTATGACcgtctcaaactcaaaagtAAGAAGAATTTAATTGACTCGGGAAATGAAAGCAGTAGTTCAGATGAAGATGCGACTCCTTTATCAAAATATACTACCCGTCAAATATTCTCTCCAGGAGAAGAAAATCAGTTGGAAATTTACTTACAGCaatcttccaaaatattttatgggTTGACCTACAAGTCTACGCGGCAGTTGGCATATGAATATGCAAGTATGTTATGTAACAAAATTCCAGACACATGGaacgaaaataaaataactggGGTAGAATTGATGAGATCATTTATGAGTCGTCATCAGAGACTTTCTTATCAGAAAGCAGAAAATACCAGCATTGCACGAGCAGCGGCTTTCAACAAAGCCAATGTTACttcgttttttaagaattatgcagaagttcaacaaaaatacaatttttctccTAATCGTATTTGGAATACTGACGAAACTGGTGTGACAACCGTTCTTCAGGCTCCAAAAGTTTTCGCCGAAACAGGGACAAAAGGAGTGGGCCAGTGCGTTTCACCTGAAAGGGGCGTATTAGTTACAATGTGCGGCTACATTTCTGCTGTGGGAAATACAATTCCTCCGGGATATGTATTCTCTCGTGTACGTATGAAGGAGCAGTTTATGTATGGTTCCGTACCTGGGCAATAG
- Protein Sequence
- MVRNYIKKRNRPDIPKDDLKKSIKAVLNRQMSIRMAASTFNIPKSTLYDRLKLKSKKNLIDSGNESSSSDEDATPLSKYTTRQIFSPGEENQLEIYLQQSSKIFYGLTYKSTRQLAYEYASMLCNKIPDTWNENKITGVELMRSFMSRHQRLSYQKAENTSIARAAAFNKANVTSFFKNYAEVQQKYNFSPNRIWNTDETGVTTVLQAPKVFAETGTKGVGQCVSPERGVLVTMCGYISAVGNTIPPGYVFSRVRMKEQFMYGSVPGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00152435;
- 90% Identity
- iTF_00152319;
- 80% Identity
- -