Alei091826.1
Basic Information
- Insect
- Aquatica leii
- Gene Symbol
- -
- Assembly
- GCA_035610365.1
- Location
- CM069437.1:38058501-38060318[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-10 1.3e-08 37.0 0.0 5 37 30 63 29 69 0.92
Sequence Information
- Coding Sequence
- ATGGCCCCTATTAAGAAAAAAggagcaaaaaataaaaaggaacgTAAACATAAACGcataaaataccaaaattattcaaatgtCTTTTTGGAAAAAGCCTTAACGGATGTTGTAAACGGCAAACTTTCGCTACGGGCAGCAGCAGATAAGTATCAAATCCCCAAATCAACCTTGCATGATAAATATAAAGGGTTTCATGGTTCAAAAATTGGGCGACCAACAGTTCTTAGTGCAGCCAATAAAAAACACATTGTTTCTGGAGTATTAACGGCGGCAAAATGGGGATGCCCCCTAACATcattcgatttaaaaaacattattaaaagttttttagatAGACAGGGAACAGTGGAAAAGCGTTTTTTGAATAATATGCCAGGGCCCAAATGGATGCGCGGTTTCATGCCACGACACAAAAATACATTATCTGCACGTTTAAGCCAAAATATTAAGCGACAAAGATCTGCCGTATCGAAAGAAATAATTGAGGAATTTTTCGTAAGTTTAGAAGAAACGTTGGAAAATGTGCCGGTCACCAATATAGTCAATTATGATGAAACTAACATGACAGACGATCCCGGGCAACAGAAAGTACTCGTTAGACGTGGGGCAAAGCATGCGGATAGAATATTAGATTTCTCAAAAACCAGTACTTCTGTTATGTTTGCCGTTTCCGCTTCTGGCGAACGTCTTCCAGTGTATGTTGTGTACAAAGCTGGCCACCTGCATGACACATGGGTAAACAGTGGTCCTAAAAGAACGTTTTATAACGTTAGTAATAGCGGGTGGTTTGACTCTTTCATTTTTGAGGATTGGTTCGATAAGGTGGCATTCCcatacttcaaaaaattaactggacaaaaagttttaatcggAGACAATCTAGCCAGTCACACATcgattaatataattaacaaatgcgaggaaaacaacattaaatttatattgctTCCCGCAAATTCAACTCATCTATGTCAGCCACTAGACGTGGCATACTTTAAACCTTTAAAACAGTCATGGAGGAGCATCCTTTTAGACTGGAAAAGAAGGCATCGCGGTGCCATTCCTAAAcaatactttccttcccttttAAAAAAAGCGTTGGATTCGCTTTCAGAATCGGAAGGTAATAACATAAAGGCAGGATTTCGAGCATGTGGAATAGTTCCACTGGACaaaaaacaagttcttaaaagAATTCTAGATGGGCTAAATCAATTATTAGAGGATAATATCGGTCCTGAGTGGTGCGACAGTTTCGGACAATACTTAAAGGAATCGAGACTATCGGATACAATACCCAAACGAGCTCGAAGAAAAAGACTCAATATTGTCCCCGGCAAAGCAGTCACCTCAGAAGACATGGCAGGTACCAGCCAAAATCTGGAGGATGAGGAGGTAAATCAAAACGAAGCAAATGAAGAGGAAACCGTTGTCGAATCTAACAACTTACGGGATGAGCtgttagaagaagaagaacttaGCCAAGAAACTGATTTAGAAGAAGAACCGGCAGATAACAGCGACAAAAATTCGACAACTTTCCAGCATGTTTTGGAAGTAGGCAAGTTTGTAGTGGTTAGCTTtgtgtataacaaaaatttaaagactgaaacacaaaaacaatatgtTGCCCAAGTATTAAGAATCGAAAGTGATGCTCTATATGAGGTAAATTGCTTACGTCAGAAACGCGATGTGTTTGTGTTTCCGGATGTAAAAGATGTTAATTTGGTTGAACTGAGTCAAATATGTCGTGTTTTAGAAGATCCGACAGTGCATCGAGGAAACTATAAGTTTGCAAACAATGTCTTTTAA
- Protein Sequence
- MAPIKKKGAKNKKERKHKRIKYQNYSNVFLEKALTDVVNGKLSLRAAADKYQIPKSTLHDKYKGFHGSKIGRPTVLSAANKKHIVSGVLTAAKWGCPLTSFDLKNIIKSFLDRQGTVEKRFLNNMPGPKWMRGFMPRHKNTLSARLSQNIKRQRSAVSKEIIEEFFVSLEETLENVPVTNIVNYDETNMTDDPGQQKVLVRRGAKHADRILDFSKTSTSVMFAVSASGERLPVYVVYKAGHLHDTWVNSGPKRTFYNVSNSGWFDSFIFEDWFDKVAFPYFKKLTGQKVLIGDNLASHTSINIINKCEENNIKFILLPANSTHLCQPLDVAYFKPLKQSWRSILLDWKRRHRGAIPKQYFPSLLKKALDSLSESEGNNIKAGFRACGIVPLDKKQVLKRILDGLNQLLEDNIGPEWCDSFGQYLKESRLSDTIPKRARRKRLNIVPGKAVTSEDMAGTSQNLEDEEVNQNEANEEETVVESNNLRDELLEEEELSQETDLEEEPADNSDKNSTTFQHVLEVGKFVVVSFVYNKNLKTETQKQYVAQVLRIESDALYEVNCLRQKRDVFVFPDVKDVNLVELSQICRVLEDPTVHRGNYKFANNVF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00152331;
- 90% Identity
- iTF_00152331; iTF_01284240; iTF_00152340;
- 80% Identity
- -