Basic Information

Insect: Aquatica lateralis
Gene Symbol: -
Assembly: None
Location: Alat1.3:692373-693086[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.6e-05 0.00076 18.0 0.5 1 23 10 32 10 32 0.97

2 8 0.0021 0.1 11.3 3.7 3 23 40 61 38 61 0.94

3 8 3.1e-07 1.5e-05 23.4 1.0 1 23 66 88 66 88 0.98

4 8 3.1e-05 0.0015 17.1 0.8 1 23 98 120 98 120 0.97

5 8 1.5e-07 7e-06 24.4 0.2 1 23 125 147 125 147 0.97

6 8 0.00013 0.006 15.2 5.1 1 23 153 175 153 175 0.97

7 8 5.1e-07 2.4e-05 22.7 5.3 1 23 181 203 181 203 0.98

8 8 4.2e-05 0.002 16.7 0.6 1 23 209 232 209 232 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.6e-05	0.00076	18.0	0.5	1	23	10	32	10	32	0.97
2	8	0.0021	0.1	11.3	3.7	3	23	40	61	38	61	0.94
3	8	3.1e-07	1.5e-05	23.4	1.0	1	23	66	88	66	88	0.98
4	8	3.1e-05	0.0015	17.1	0.8	1	23	98	120	98	120	0.97
5	8	1.5e-07	7e-06	24.4	0.2	1	23	125	147	125	147	0.97
6	8	0.00013	0.006	15.2	5.1	1	23	153	175	153	175	0.97
7	8	5.1e-07	2.4e-05	22.7	5.3	1	23	181	203	181	203	0.98
8	8	4.2e-05	0.002	16.7	0.6	1	23	209	232	209	232	0.95

Sequence Information

Coding Sequence: ATGCACCGTAACAGAAACAGAAAATACTTCCAGTGCGATTTATGCGACAAAAGTTTTGTGGCCGAAATGAATTTGAAATTGCACAAAGACCGTCACATAAAAAAATACAGCATATTTTGTAGCACGTGTAAAAAAGGATTTTATAGGCAGTGCGATATGATGCGTCACTTCTTGAAAGTGCACGAAAAAACTTCACACGTATGCAAAATTTGCGCTAAACCATTTACGTCGAACGACTCATTGATACAACACATTAAAAAGCACAATGACGATTACCTATCTCTTGGCAAATTCAAATGCAATCAGTGCGATAAAACTTTTGAATGGAAACGATCGTTAATAATTCATCTTGATTCACACATAAGTAACAAGTTTGTGTGTAATATTTGTGGAAAATCAGTGTCGAACAAAAGGGGCTTGGAAAAGCATATATTACAACACGGCGAATATAAACCCCACAATTGTCAATTTTGCGAAATGAGCTTTACAAGCGAGAAAAAATTAATTGCACATCATCGGACTCACACTATAGCAAAACCACACCAATGCGAAATTTGCAAAAAATGTTTTAGTCAAAAAACTTATTTAGCGATTCACATAAGATACCACACTGGAGAAAAACCTTATAAATGTGATTTGTGCGACCGTGCTTTTGTCAGAATCAATTTGTTAAATCTTCACAAAAAAGATAAGCATTCCATTACAGCATTGTAG
Protein Sequence: MHRNRNRKYFQCDLCDKSFVAEMNLKLHKDRHIKKYSIFCSTCKKGFYRQCDMMRHFLKVHEKTSHVCKICAKPFTSNDSLIQHIKKHNDDYLSLGKFKCNQCDKTFEWKRSLIIHLDSHISNKFVCNICGKSVSNKRGLEKHILQHGEYKPHNCQFCEMSFTSEKKLIAHHRTHTIAKPHQCEICKKCFSQKTYLAIHIRYHTGEKPYKCDLCDRAFVRINLLNLHKKDKHSITAL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00153900;
90% Identity: -
80% Identity: -