Alat000152.1
Basic Information
- Insect
- Aquatica lateralis
- Gene Symbol
- -
- Assembly
- None
- Location
- Alat1.3:13187-14452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0055 0.26 10.0 3.9 1 23 113 135 113 135 0.98 2 11 6.3e-06 0.0003 19.3 0.5 1 23 141 163 141 163 0.99 3 11 0.00063 0.03 13.0 3.9 1 23 169 191 169 191 0.97 4 11 2.7e-06 0.00013 20.5 0.6 1 23 197 219 197 219 0.98 5 11 0.0011 0.053 12.2 4.3 1 23 225 247 225 247 0.98 6 11 3.5e-06 0.00017 20.1 0.5 1 23 253 275 253 275 0.95 7 11 1.3e-05 0.00061 18.3 0.4 1 23 281 303 281 303 0.98 8 11 0.00012 0.0057 15.3 0.1 1 23 309 331 309 331 0.97 9 11 0.0018 0.086 11.6 0.1 1 23 337 359 337 359 0.98 10 11 5.6e-05 0.0027 16.3 0.9 1 23 365 388 365 388 0.97 11 11 0.00021 0.0099 14.5 4.2 1 23 397 419 397 419 0.98
Sequence Information
- Coding Sequence
- AACTTAAACATCACACCGAACCCGATCACTTGCAACCAATGTATGGTCACAATTGAGAAAATATATGAGTTCAAGCAACTGTGTTTGCAAACCGAAACCACTGTAAGGATCTTACAAAAAAAACCTTTTGACAATGTCTTAACCAAAGTTAAAGAAGAACCCATCAAAGAGGAGTTGGTTGATGACACTAAAATCGAATTCTCAGACTTGCAAATCGTTAAAGATGATTGCCAGGAAGATAATACGGATATGCCTGTAGGTTTCGAAGAACCTTCAAAAACAGAATCTGACTTCAATATTAACAAAGACGCGAATTTGATTCAACAGATCAGATATTTTCAGTGTCATGTGTGCAATTATAGCTGTGTGAAGAAGTTGTCAATTGTAGTGCATTTACGGAACCACAGCGGGGAGAAGCCGTATAAGTGCCCCGAGTGTGATTTCAAAACAGCAAGAGCGGATACACTGCGACTTCATCGTTTAACGCACTCCGACAAGAAGTTATACCATTGTCACGATTGTGACTTTAGCACCAATCGAAAAGGAAGTTTGATCTATCACTCTATGGTTCATCGAAATATAAAACCTTTTGAGTGTGATTTGTGCAATTATTCTACTCGTAATAAGGACTCGTTAAAAAGTCACATCCTAGTGCACAATGGTATAAAAGTATACAAATGCGATCAATGTAATTTTCAAACTGCATATAAATGTAGTTTAAACAAACACATGACAATTCACAGCTCTGTGAAACCGTTTCTTTGTAGTACTTGTGGGGTTTCTGTGCGTCGTAAGTGGGATTTAAATAAACACATGAAGATTCACTGCTTGGGGAAACCTTTTGTTTGTGCAACTTGTGGGTTTTTGGCTCGACGTCGGTCTAATTTAAATAGACACATGCAGGTTCACAACTCGGTGAAATCGTTTGTTTGTGGAACTTGTGGATTTTCCGCTCGGCGACAATGGGATTTAAACAAACACGAGTTGATTCACAGCTCGGTAAAACCGTTTGTCTGTGAAACTTGTGGGTTTTTAGCTCGAAGTGTGTCTCTCTTAAGGGAACACATGATCCGCCACACAAGCATAAAAGATTTTAAATGTGAAATGTGCAATTTCTCAACTAAGGCTAAAAAGTATTTAATGGCACACATGCGTGCCATCCATGATAAAGAGAAGTTGGTTAAAAAGCACAAATGTGATCAATGCAATTTTCAAACTATGTATAAGAGTAATTTAAATAAACACATAAAGATTCACAACTCGTAG
- Protein Sequence
- NLNITPNPITCNQCMVTIEKIYEFKQLCLQTETTVRILQKKPFDNVLTKVKEEPIKEELVDDTKIEFSDLQIVKDDCQEDNTDMPVGFEEPSKTESDFNINKDANLIQQIRYFQCHVCNYSCVKKLSIVVHLRNHSGEKPYKCPECDFKTARADTLRLHRLTHSDKKLYHCHDCDFSTNRKGSLIYHSMVHRNIKPFECDLCNYSTRNKDSLKSHILVHNGIKVYKCDQCNFQTAYKCSLNKHMTIHSSVKPFLCSTCGVSVRRKWDLNKHMKIHCLGKPFVCATCGFLARRRSNLNRHMQVHNSVKSFVCGTCGFSARRQWDLNKHELIHSSVKPFVCETCGFLARSVSLLREHMIRHTSIKDFKCEMCNFSTKAKKYLMAHMRAIHDKEKLVKKHKCDQCNFQTMYKSNLNKHIKIHNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -