Alat003346.1
Basic Information
- Insect
- Aquatica lateralis
- Gene Symbol
- -
- Assembly
- None
- Location
- Alat1.3:1139701-1141474[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00024 0.011 14.3 5.5 1 23 136 158 136 158 0.98 2 16 0.0004 0.019 13.6 3.3 1 23 164 186 164 186 0.98 3 16 4.5 2.2e+02 0.9 1.7 11 23 202 214 198 214 0.87 4 16 6.7 3.2e+02 0.3 0.2 13 21 227 235 225 236 0.82 5 16 0.00095 0.045 12.4 0.1 1 23 243 265 243 265 0.97 6 16 9.4e-06 0.00045 18.7 0.5 1 23 271 293 271 293 0.97 7 16 9.7e-05 0.0046 15.6 1.3 1 23 299 321 299 321 0.98 8 16 0.00013 0.0059 15.2 1.2 2 23 327 348 326 348 0.96 9 16 7.2e-05 0.0034 16.0 0.5 1 23 354 376 354 376 0.97 10 16 2.7e-05 0.0013 17.3 1.1 1 23 382 404 382 404 0.97 11 16 0.00055 0.026 13.2 2.6 1 23 410 432 410 432 0.98 12 16 0.00015 0.0073 14.9 0.3 1 23 438 460 438 460 0.98 13 16 0.0025 0.12 11.1 2.7 1 20 466 485 466 491 0.94 14 16 0.039 1.9 7.4 1.0 1 23 492 514 492 514 0.96 15 16 0.017 0.82 8.5 0.1 1 23 520 542 520 542 0.98 16 16 0.0099 0.47 9.2 0.3 1 23 548 570 548 570 0.97
Sequence Information
- Coding Sequence
- ATGGGTGAAAATACAACAAACCCTTGTCGAATTTGTTTACAAGAAATAGTGGAAACCGAACAATATTACTTTCTCAATAACCACAATAACTTAAAGCTACAATGCAAGTTGCTAGACGTTCTACCAGAAATTGACTTAAACATCACATCAAACCCGATTAGTTGTAACCAATGTATGATCACAATTGAAGAAATATCTGAATTCAAGCAACTGTGCATGCAAACTGAAACCACTATAAGAAAATCACGACAATTAACCTACGTTAAAGAAGAAACAACCAAAGAGGAATTTGTTGATGTTAATGATAAAGTTGAACTTTCAGACTTAGAAATTAAAAACGATGACTACTTTCAAATCAATACAGATACGCTTGTATGCATTAAAGAACCTYSGAAAACAGCAATGTATGATTGCCACAATTGCGACTTTAATACTAATAATAAAAAACATTTAATTCGACATCTCAAGGTACATGAGAGCATTGGGTCTTTTCAGTGCAGCATATGTAATTATAGTTGTATGAAAAAGTTGTCACTTAAAGTGCATTTGAAAATTCATACTAGGAAGAGGCCGTATCAGTGTATTGATAGTAATTTCAGATCAGCAAGTAAACATACACTTCAACAACATTATTTAAAGCACAGCAGTAAGAAATTATACCAATGTCAAAGTGGGCATCGAGTTAGTTTAAAGAAACACATGATGAATGACAGCTCGGAAAAACAGTTTGTTTGTGAAACTTGTGGGGTGTCTCTGTTAAGTAGGTCGGGTTTAAAGAGACACATGGTCATTCACAGCTCAGAGAAACCATTTGTTTGTGAAACTTGTGGATTCTCTACTCGACGTAAGGAGACTTTAAAAGAACACATGGTGATTCACAACTTGAAAAAACCATTCGTTTGTGATACTTGTGGTTTCTCTACTCGACATAGGAGGGCTTTAAACGAACACGTGAAGATTCACAACTCCGAAAAGCTTGTTTGTGAAACTTGTGGGTTCTCTACTGGACGTAAGTGTACTTTAGAGCGACATATGCTCATTCACAGCTCAGAAAAACCATTCGTTTGTGAAACTTGTGGATTCTCTACTAGACATAAGGGAGGTTTAAAAGAACACATAGTGATTCACAACTCCAAAAAACAATTTGTTTGTGATACTTGTGGGTTTTGTACTCGACGTAAGGGAGGTTTAAAAGAACACATGGTGATTCACAACTCCAAAAAACCATTTGTTTGTGAAACTTGTGGATTCTTTACTGGACGTAAGTGTACTTTAAAGCAACACATGCTCATACACAGCTCAGAAAAACCATTTGTTTGTGAAACTTGTGGGTTCTCTGTTATAAGTAGGATACGTTTAAAGAAACACATGCTGATTCACAGTTCAGAAAAACCATTTGTTTGTGAAACTTGTGGGTTCTCTACTCGACATAAGGGAGCTTTAAAGGAACACGTTCACAACTTCAGAAAACATTTTGTTTGTGAAACTTGTGGTTTTTYTACTGGACGTAAGTATATTTTACGGCAACATTATACAATTCACAGCTCAGTAAAACCGTTTGTTTGTGGAATTTGTGAGTTCTCTACTCAAGATCAGACAATTTTACAAAGTCACATGCTCATTCATAGCTTGSAAAAACTATTTGTTTGTGAAACGTGTGGGTTTTCTACTCGACTTCAGTTAATTTTACAGAAACACATGCTCATTCACAGCTTGGAAMAATGA
- Protein Sequence
- MGENTTNPCRICLQEIVETEQYYFLNNHNNLKLQCKLLDVLPEIDLNITSNPISCNQCMITIEEISEFKQLCMQTETTIRKSRQLTYVKEETTKEEFVDVNDKVELSDLEIKNDDYFQINTDTLVCIKEPXKTAMYDCHNCDFNTNNKKHLIRHLKVHESIGSFQCSICNYSCMKKLSLKVHLKIHTRKRPYQCIDSNFRSASKHTLQQHYLKHSSKKLYQCQSGHRVSLKKHMMNDSSEKQFVCETCGVSLLSRSGLKRHMVIHSSEKPFVCETCGFSTRRKETLKEHMVIHNLKKPFVCDTCGFSTRHRRALNEHVKIHNSEKLVCETCGFSTGRKCTLERHMLIHSSEKPFVCETCGFSTRHKGGLKEHIVIHNSKKQFVCDTCGFCTRRKGGLKEHMVIHNSKKPFVCETCGFFTGRKCTLKQHMLIHSSEKPFVCETCGFSVISRIRLKKHMLIHSSEKPFVCETCGFSTRHKGALKEHVHNFRKHFVCETCGFXTGRKYILRQHYTIHSSVKPFVCGICEFSTQDQTILQSHMLIHSLXKLFVCETCGFSTRLQLILQKHMLIHSLEX
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -