Alat003341.1
Basic Information
- Insect
- Aquatica lateralis
- Gene Symbol
- -
- Assembly
- None
- Location
- Alat1.3:1110999-1112592[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00022 0.011 14.4 4.8 1 23 137 159 137 159 0.98 2 13 0.0027 0.13 11.0 2.3 1 23 165 187 165 187 0.98 3 13 0.00055 0.026 13.2 1.5 1 23 193 215 193 215 0.97 4 13 0.00014 0.0064 15.1 1.1 1 23 234 256 234 256 0.97 5 13 1.7e-05 0.00083 17.9 0.4 1 23 262 284 262 284 0.95 6 13 7.1e-06 0.00034 19.1 0.3 1 23 290 312 290 312 0.97 7 13 1.4e-06 6.7e-05 21.3 1.1 1 23 318 340 318 340 0.98 8 13 7e-06 0.00033 19.1 2.6 1 23 346 368 346 368 0.98 9 13 0.0023 0.11 11.2 0.9 1 23 374 395 374 395 0.98 10 13 0.00031 0.015 14.0 0.4 1 23 401 423 401 423 0.97 11 13 9.9e-06 0.00047 18.7 1.3 1 23 429 451 429 451 0.97 12 13 1.3e-05 0.0006 18.3 1.0 1 23 457 479 457 479 0.98 13 13 0.00043 0.021 13.5 1.8 1 23 485 507 485 507 0.95
Sequence Information
- Coding Sequence
- ATGGGTAATTGTCGAATTTGTTTACAAGAAATTGTGGAAACTGAGCAGTATTATTTTCTCAACGACGGCAATGACTTAAAGTTACAATTTAAATTACTGGATGTTCTACCAGAAATTGATTTAAAAATAACATCAAACCCAATTATTTGTACCCAATGTATGCTCACAATTGAGGAAATACATGAATTCAAACAACTGTGCATGCACACAGAAACTGCTATAAGACAATTACGACAAACACCTCTTAAGCATGTCATAACTGATATTAAAAAAAAAACTATCAAAAAGGAGTTGGTTGATGACAATATTAAAGTTGAAGTTTCCGATTTGCAAATTATCAATAATAACAGTTTAGAAATTAATATAAATGTACCTGTATGTATTGAGGAACCGTCGAAAACAGAATTGTATTATTGCCATGAGTGTGACTTCAACACCAACAAGAAAACGAGTTTGATTCGACACTTAAAGAGACACAAGAACATCGAGTCTTTTCATTGTAACATATGTAATTACAGCAGTGTAAAAAAGTTGTCGTTTATACTGCATTTGCGAATACATACTGGGGAGAGGCCATATAAATGCATTCAGTGTGATTACAGATCAGCAAGAAAACGTAATCTTCAAGTTCATTATTTAACGCACAGCAGAAAGAAAGAAAATGCGCACAAAGATTTAATTAACAACTCAGTGAAATCGTTTTTTTGTGAATCCTGTGGGTTTTCTACTCGTTATAAGGCGAGTTTAAAGGGACACATGCTCACTCACAGCTCAGAAAAACCTTTTCTTTGTGACACTTGTGGGTTCTCAACTCGACGTAAGTGGGCTTTAAAAGAACACATGATGATTCACAACTCCAAAAAATCATTTGCCTGTGGAATTTGTGAGTTTTCTACTAGACGTCAGTCTAGTTTAAACCAACATATGATAATTCACAGCTCAGTAAAACCATTTGTTTGTCAAGTTTGTGGATTTTCTACTTCAAGTCGTTCACGTTTAAAGCGACACATGATCACTCACAGCTCGCAAAAACCATTTGTTTGTGAAACTTGTGGGTTCTCTACTCGACGCAGATGCAACTTAAAGGAACACATGATGGTTCACAGTTCAATAAAACCATTTGTTTGTAGAACCTGTGGGTTCTCTATTCAACGTAAAGATTTAAAGGAACACATGATGTCTCACAGCTCAGTAAGACCGTTTACTTGTGATACTTGTGGATTCTCTGCTCGAATCAAGAAGGCTTTAAGGAAACACATGGTTATTCACAGCTCCCATAAACCGTTTATTTGTGCAACTTGTGGGTTCTCTAGTCGACGTAAGAGGTACTTAAAAGAACACATGAGAATTCACTGCTCGGAAAAACCATTTGTTTGTGAAACTTGTGGGTTTTCTACTCGATTTAAGACTAGTTTAAAGAGACACATAATAATCCACAGTTCAGTAAAACAGTTTCTTTGTGGAACTTGTGGGTTCTCTACTCGATATAAGTTCAGTTTAACCAAACACACGATGATCCACAGCTCGGTAAACGAACGCACATGA
- Protein Sequence
- MGNCRICLQEIVETEQYYFLNDGNDLKLQFKLLDVLPEIDLKITSNPIICTQCMLTIEEIHEFKQLCMHTETAIRQLRQTPLKHVITDIKKKTIKKELVDDNIKVEVSDLQIINNNSLEININVPVCIEEPSKTELYYCHECDFNTNKKTSLIRHLKRHKNIESFHCNICNYSSVKKLSFILHLRIHTGERPYKCIQCDYRSARKRNLQVHYLTHSRKKENAHKDLINNSVKSFFCESCGFSTRYKASLKGHMLTHSSEKPFLCDTCGFSTRRKWALKEHMMIHNSKKSFACGICEFSTRRQSSLNQHMIIHSSVKPFVCQVCGFSTSSRSRLKRHMITHSSQKPFVCETCGFSTRRRCNLKEHMMVHSSIKPFVCRTCGFSIQRKDLKEHMMSHSSVRPFTCDTCGFSARIKKALRKHMVIHSSHKPFICATCGFSSRRKRYLKEHMRIHCSEKPFVCETCGFSTRFKTSLKRHIIIHSSVKQFLCGTCGFSTRYKFSLTKHTMIHSSVNERT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -