Alat001704.1
Basic Information
- Insect
- Aquatica lateralis
- Gene Symbol
- bab2
- Assembly
- None
- Location
- Alat1.3:299758-305582[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.9e-12 1e-09 36.1 0.0 1 39 364 403 364 407 0.90 2 4 1.7e-13 9.2e-11 39.5 0.1 1 39 418 456 418 460 0.95 3 4 9.4e-18 5e-15 53.1 0.0 1 45 473 518 473 518 0.97 4 4 5.8e-17 3.1e-14 50.6 0.0 1 40 525 565 525 569 0.92
Sequence Information
- Coding Sequence
- ATGTCTGGACAACATTACTGCCTAAGGTGGAACAATTACCAAAGCAATATGACTTCAGTTTTCCACCAACTTCTTCAAAACGAAGCATTTGTGGACGTTACGTTAGCTTGTAAGGATTTATCCCTTAAAGCTCACAAAGTGGTGCTTTCTGCGTGTTCCTCATATTTCCAAAAGTTATTATTAGAAAATCCTTGTAAACATCCCACGATAATTATGCCACAAGATGTATGTTACGCTGATCTCAAATTCATCATTGAATTCGTATACAAAGGAGAAATCGACGTTTCTCAAGCAGAGTTACAGTCGCTTTTAAAGACAGCCGACCAATTGAAAATAAAAGGTCTCTGCGAGTCTGAAGATAAGGAAAATTCGTCGTCACCACAATTGATGCCAAGGGGTTTCCCAAAAATTTCTAAGGTATCTTCACAGTACAGAAATTTAGATAGTAACAAGAGGCGTAAAATTCAAGAATTTGATGCAAGTGATTTCTCCGATAGGGACGATGATGCGAAAGAGTCTCTTATAGAAGACCATATTTCCGATTATGATAGTGATGTACCGTTAGTTGTTGATGAGGGACCAAAAAGGAAAAAAGTGACTCATTCTACACCTGTTAACATGAGCAGTCATGGCCTTTTGGCTGGGCAGTTATGCGATAACGATGACTTTCCACCTGAGCCACCGGCTCCTAGTGCAACGCCAGTCGGTCACGTTGACTTACAAGAACATTCACCTACACGAACATTGTTGCAATCATCACATAGGACAGACCTGTCAGACGTGCATATAAAATATGAGGAAATCAAAAAGGAAACGGTCGTTAAATTTGAAACTTTACGATCGTACGATCACGATTCAATGATGGATATGGACGGAACACACATGTCTGGACCGGATCACTCTATGGAAAGTCATGAGGATGCAGAAAGAGCCATGCATTCTATGATGGTGACACCGGAATTAATGGGTATAATACCAGGTGGTTCGGGTAGTTTAGATCCGTCTAACGGGGATAATGGTCATCATAAAAGTAATGGGCATTCGGATCTCTTAACTACACGATCGCACGGAGGAGGGCCTAAAACGTGGACCCAAGAGGATATGGAGTTAGCGTTAGATGCCTTAAGAAATCACAATATGAGTCTGACTAAAGCTTCTGCTACATACGGAATTCCCTCTACAACGTTATGGCAAAGAGCCCATAGGTTAGGTATAGATACGCCAAAAAAAGAAGGGCCCACGAAATCATGGACTGAAGAAAATTTAAATTCGGCATTAGAAGCATTAAGAACGGGCACAATTTCTGCGAATAAAGCTAGCAAGGCCTATGGAATACCTAGTAGTACCCTGTATAAAATAGCTAGAAGGGAAGGTATCAAATTGGCCGCGCCATTTAATGCAGCACCCACGACATGGTCACCAGAAGACTTAGAAAAAGCTTTAGAATCAATTAGATCAGGTCAATCGTCGGTACAAAAGGCTTCTACAGAATTTGGAATTCCCACAGGAACGTTATACGGTAGATGTAAAAGAGAAGGGATAGAATTATCCAGATCGAATCCAACGCCTTGGTCAGAAGACGCTATGGGTGAAGCGTTAGAAGCTGTTAGGCTGGGTCACATGTCAATCAACCAAGCGGCAATTCATTATAACCTTCCTTATTCGTCTCTTTACGGAAGGTTTAAACGCGGAATAAAATACGAAACAGAAGCAATAGACTCAAATAATTCAGATAGTCAATCTCAGCCAGACTCACACATACTTGTAATGGATTATCCAAATTCCCATCAACAAATTCAGTATCAACATCATGCAAATAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACKDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDVCYADLKFIIEFVYKGEIDVSQAELQSLLKTADQLKIKGLCESEDKENSSSPQLMPRGFPKISKVSSQYRNLDSNKRRKIQEFDASDFSDRDDDAKESLIEDHISDYDSDVPLVVDEGPKRKKVTHSTPVNMSSHGLLAGQLCDNDDFPPEPPAPSATPVGHVDLQEHSPTRTLLQSSHRTDLSDVHIKYEEIKKETVVKFETLRSYDHDSMMDMDGTHMSGPDHSMESHEDAERAMHSMMVTPELMGIIPGGSGSLDPSNGDNGHHKSNGHSDLLTTRSHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIKLAAPFNAAPTTWSPEDLEKALESIRSGQSSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYETEAIDSNNSDSQSQPDSHILVMDYPNSHQQIQYQHHANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00003877;
- 90% Identity
- iTF_00151822;
- 80% Identity
- iTF_00151822;