Aruf014094.1
Basic Information
- Insect
- Aptinothrips rufus
- Gene Symbol
- Hivep2
- Assembly
- GCA_902196195.1
- Location
- CABIKL010000084.1:2079-9889[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0049 1.2 10.7 0.1 1 23 237 259 237 259 0.96 2 12 1.8e-05 0.0043 18.3 1.4 1 23 265 287 265 287 0.98 3 12 9.6 2.3e+03 0.3 0.1 1 7 351 357 351 378 0.79 4 12 0.12 28 6.4 0.2 2 23 384 406 383 406 0.93 5 12 0.0054 1.3 10.6 0.0 1 23 579 601 579 601 0.96 6 12 0.0018 0.41 12.1 0.8 1 23 610 632 610 632 0.98 7 12 0.0086 2 9.9 2.8 1 23 638 661 638 661 0.97 8 12 0.081 19 6.9 5.8 1 23 974 997 974 997 0.95 9 12 0.0025 0.59 11.6 1.6 3 23 1203 1223 1201 1223 0.96 10 12 0.013 3.1 9.3 3.9 1 23 1229 1252 1229 1252 0.96 11 12 0.0081 1.9 10.0 0.5 3 23 1308 1328 1306 1328 0.93 12 12 0.0065 1.5 10.3 5.9 1 23 1334 1356 1334 1356 0.98
Sequence Information
- Coding Sequence
- ATGTCCGAAGATGAGGGCcggaggggcagggcgacgAGGCGCaccggggccggggcgtggccgcgcggggcggggcgcggggcggggcgcggggcggagcgcggggcggggcgcggggcggagccggcagggggagggcggaCCAAGATGCTCAGGTCGACGCTGGTGGGGAGCCGGGTGGGGGCTGGCGCGAGCAGcgtcggaggggagggcaggcggaGAGCGCAGCCCGCGCCGCCTCAGCCGCCACCGCAACAGAGACTGCGGCAACGCCGGCTGCAGCCCGGGCCACAGCCGCTGCCGCAacagcaggaggcagcagcagcagcagcagcggggggaGGAGAGCAGCCCGTGGAGCGGCGGCCGCAGACGCAGAAGACGACAGCAGATGCACTTAGGAGCACCTCCCCCGCTGAGAGCGAGGAGCCGGCGGCTAGGGCGAGCCCGGAGGACTGTAAGGAGCGGCCTCCCGCCACCAAGAGCACCAGCACCATGACGACGgccacctcgccgccgcccccgcaggagACGGAGGGCCAGCGCAGCGAGGACGCCTTGCCCGCCGAGGAGCCCGAGGCTTCGGACCTGGGCTCGCGGCTGGTGTGCGCCATCTGCGACGGCGTCGTGGACTCGGACgtcgccctcgccgcccacATCCAGGAGCTGGGGCTCAACCACCTCTCCAGCGCGGACGACGTGGAGGGGTTCGCGTGCCGCGTGTGCCGCCGCGTGTTCGCCAGCGCCGACGTGCTCGACAGGCACGTGCTGAGCCACCCCGGCGAGCAGGTGTTCAAGTGCCCACTGTGCGGCCAGTCGCTGCGTACCAACGGCagcctgcaccgccacgccaggcagcacGTCAGcgaccaccagctgcagctgctggaccagctggagCTGCGCGGCTCCAAGCGGCGacacgacaacaacaacgactACGAGATGGAGCCCAAGCGGCGCTCCCCGTCCAGCACGGAGGACGGCGACGACGCGGCGGTGGCGGCCAGGACGCTCAgccccgcgctcagccccgTGCCCGGCCAGCGCTTCACCTGCCCGGtgtgccccgcctcgcagccCTTCCGAGCGCCCTACCTgcacgagctggagctgcacctGGAGCAGAGCCACCGCGACTACAGCGTCTCCTGCGACCTGTGCGGCGACACCTACAAGAGCGTGCGCGACCTCAACCTGCACCGCTACTCGGCGCACCGCGGCAAGTCCCGGGGCGCGCGCGACGTGGTGGGCTTCAAGGACCTCACCTTCATCGACTTTAGCAGCCAGAAGTTCCCCCACATCGCGCGCGTCGAGTGCGAGAAGagcctgcaccgcgccgccagccggcTGCACCCCTTCCAGTGCGAGTGCGGCCGCGCCTTCCCGTGCGACTCGGCGCTGGCCATCCACCGCCAGGCCTGCCCCAACACGGTGTACGTCGACTCCCCCGCCGACCTGTCgcaggcccagccccaggcccagaCCCTGGACAGCACCAAGGGGGACTTCTTCGCCAAGCTGGACCTGCTCAACAACAGCACGCCGTCATCGCCGTCCCTCGGCAGCAGTCCGATCCTCGCCCGCCAGCCGTACAGCGTGGAGCGCGACCTGGCCGACATCCAGAGCATGCTGAGCGTGAgcgccgggctgctgcaggaccAGTCCGAGGAacacgaggagcagcaggacgccTTCGCGGCCGAGTTCCGTCGCATGAAGCAGCGCGGCGAGTTCCCCTGTCGCCTCTGCCCCGAGGTGTTCCCCAACCTGCGCGCCCTCAAGGGCCACAACAGGGCGCACATGTCGGCGCCGGGCACGGACGGCTACCGCTGCAACATGTGTCCGCACGCCGCCCTCGACAAGATGGCCCTGCAGCGGCACATGCGCACGCACAACGGCGCTCGGCCCTACGAGTGCGCGCTCTGCCGCTTCGCCTTCACCACCAAGGCGAACTGCGAGCGGCACCTGAGGAACCGGCACGCCAAGTGCTCCCGCGACGAGGTCAAGAGCTCCATCATCTACCACCCCTCCGAGGATCCCGGCAACGACCCCGAGCTGCAGGCCAAGCTGGACGTAAAGCGGTCGCTGTTCGCCGAGCACGGCGACCTCCGCGACGACCTGACGTCGTCAGAGCGGGGCTCctcgccgctgccgcccgcacCCTCCCAGCTGCTGGAGGATGACTGCCAGCGGCGACACAGCCTGGACGTCGGCACCATGACGTCAGAGGACGAGGCTGACCGCCAGTCACCGCTCGACCTGAGTATGGTGCTCGACCTGAGCAAGAagcggcccgccagccccgtgcacgaggaggacgacgaggacgaggcacAGCACGAGAGCGAGGACGTGGACATGGATGACGACCAGCCCCAGGACCTCTCCAGGAAGCCGTCGTCGGAGTCACAgtccgcggccgccccgcagtccacgccGCTGCAGTCCCCGGAGGCGCTGCCCTTCCCCCAGCTCTACGTGAACCCGTACCAGCTGGGCGTGCAGGCCGCCGGCCTCCCACCCACGCAGAGCCTGCCGGAGGGTCTGGCCCCGGGGCTGGCCCCGGGCATGCCCTTCTCCTACTACCCCCCGCAGCTACCTGGTCTGCTCCGCAGCCTGCAGCTGGGCGGCGGCCTGGGCGGCGGCCTGGTGCTGGAGCCCATgcgcctgctgcagcgcccGCCGCCCTTCCTCTCGGGCGAGGCCAGCCTGGtggccctgcccgcgctgcccgcactgcccgcctCCGTGCCCCCCGTCGTGGTCGACCACAAGGAGGAGCCGCTGCGGTCGTCCGCCAGCCCCAAGTCCGAGCGCAGCTCCGCGTCAGACTCTCAGGCGCACAGCAAGATGGTGATGAAGAACGGCGTCCTCATGCCCAAGCAAAAGCAGAGGCGCTACCGCACCGAGCGGCCGCACGTGTGTGAGCACTGCTCCGCCAGGTTCACCCTGTCCTCCAACAGGGAGCGCCACGTGAAGCACCAGCACCCGCAGTTCTGGAGCCAGCGGCACCGCGGCCCCCTCGTGGTGCGCGACAACTCGTcaccccccactccgcccctggGCGCGTCCACCCCGATGAATCCGGACGGCACCCCACAAACCAACATATCTTCCTGCGATTCGGACAAGGTGAGGGTCAAGGACGAGGACGAAGAGGACGAGGGTCTTGTCATCGACGAGGAGCGGCCTTCCACTGGGGACCACGTGGACGATGGCACTGAGGGCGACGCGGAGGACGAAGGGCTGCCCGCCCACGCCGTTCTGAGTGCCGAGGGAATTCCCTCCTCGACTCCCGTCACCAGCTCTCGAACCGCTCCAGACGCGGGCGCGGCGCCTGTCGCCGCTCCTGGAGAAGATCTCGTGAGTGTGTCCAGGCTGCTAGACAATGCCTCCACTCAGACGTTCCGGCAGTTCTTCAGGGATGGAGAAGAGGCGGCACCCGCCCCCCACGAGGAGAacagcgaggaggacgaggaggggctGGTGGCAGGGTCTCCGAGCGAGGGCAACAACTCCGGCAGCGAAGAGAAGTCCGAGTCGGAGAGCGCCGTCCCtcagaagaagaagagtgcCTACTCTTTGGCGCCAAACAGAGTCTGCTGTCCATATTGTTCCCGCAAGTTCCCTTGGACCTCCTCACTTCGCAGGCACGTGCTCACCCATACTGGGCAGAAGCCGTATAAATGTACCTACTGCCCTCTCCTCTTTACTACAAAAAGCAACTGTGATCGTCACTTAGCAAGGAAACACAGCAATAAGAAGGATGCCAATAGTAGCAGCAGTGGTGTGAGCACTGGAACTCCTAACAGCAGCACAACAAGTGTGTCTCCAGGATCATCTGCGAGCAGCGGATCGCCTCCTGATGTCATCAGCACCAGAGCATTGGCCCTCAATTATGCTAACCGCAAGGTAATGTGTGCATTTTGCATGCGTCGTTTCTGGTCTGCAGAAGATCTTCGCCGTCACATgcgcacgcatactggggaaCGGCCTTTCTCTTGTGATGTATGCCGCAGACGATTCACTTTGAAACACAGCATGTTGCGGCATCGCAAGAAGCACAATGATCTgtccaacaacaataacaatagcaTAAGTGCCCCCTTAGTCCCTGGAGCTGAAGATCTCTCACCATCAGCAACCAGTGGAGATGAGGAGGGGTTCTCAGCATCCCTCAAACATGCACCATCCCCTGCTGAACTCCTCATGCATCATGTGAAGATGACTAAccacaataacaacaatatCAATATGGCAGGTGTGAGTAAAGTGTTGATGGCAATTTGTGACAGCCATGTTAACTTAAAGCGAAACTTTCGGagaaaagaggaagaggatAGTGGTCTTATCAGCAATCTGCTTGGGATTGGTGACCCATCTATCATAGACAAGGTCTTACTTTCCAAGTCAGCTGATGATGCAGAAAAGCTTCTTGGCGTTTTTAAAAATGGGAATAAGAGCAGCAATGGGCGCACTTAA
- Protein Sequence
- MSEDEGRRGRATRRTGAGAWPRGAGRGAGRGAERGAGRGAEPAGGGRTKMLRSTLVGSRVGAGASSVGGEGRRRAQPAPPQPPPQQRLRQRRLQPGPQPLPQQQEAAAAAAAGGGEQPVERRPQTQKTTADALRSTSPAESEEPAARASPEDCKERPPATKSTSTMTTATSPPPPQETEGQRSEDALPAEEPEASDLGSRLVCAICDGVVDSDVALAAHIQELGLNHLSSADDVEGFACRVCRRVFASADVLDRHVLSHPGEQVFKCPLCGQSLRTNGSLHRHARQHVSDHQLQLLDQLELRGSKRRHDNNNDYEMEPKRRSPSSTEDGDDAAVAARTLSPALSPVPGQRFTCPVCPASQPFRAPYLHELELHLEQSHRDYSVSCDLCGDTYKSVRDLNLHRYSAHRGKSRGARDVVGFKDLTFIDFSSQKFPHIARVECEKSLHRAASRLHPFQCECGRAFPCDSALAIHRQACPNTVYVDSPADLSQAQPQAQTLDSTKGDFFAKLDLLNNSTPSSPSLGSSPILARQPYSVERDLADIQSMLSVSAGLLQDQSEEHEEQQDAFAAEFRRMKQRGEFPCRLCPEVFPNLRALKGHNRAHMSAPGTDGYRCNMCPHAALDKMALQRHMRTHNGARPYECALCRFAFTTKANCERHLRNRHAKCSRDEVKSSIIYHPSEDPGNDPELQAKLDVKRSLFAEHGDLRDDLTSSERGSSPLPPAPSQLLEDDCQRRHSLDVGTMTSEDEADRQSPLDLSMVLDLSKKRPASPVHEEDDEDEAQHESEDVDMDDDQPQDLSRKPSSESQSAAAPQSTPLQSPEALPFPQLYVNPYQLGVQAAGLPPTQSLPEGLAPGLAPGMPFSYYPPQLPGLLRSLQLGGGLGGGLVLEPMRLLQRPPPFLSGEASLVALPALPALPASVPPVVVDHKEEPLRSSASPKSERSSASDSQAHSKMVMKNGVLMPKQKQRRYRTERPHVCEHCSARFTLSSNRERHVKHQHPQFWSQRHRGPLVVRDNSSPPTPPLGASTPMNPDGTPQTNISSCDSDKVRVKDEDEEDEGLVIDEERPSTGDHVDDGTEGDAEDEGLPAHAVLSAEGIPSSTPVTSSRTAPDAGAAPVAAPGEDLVSVSRLLDNASTQTFRQFFRDGEEAAPAPHEENSEEDEEGLVAGSPSEGNNSGSEEKSESESAVPQKKKSAYSLAPNRVCCPYCSRKFPWTSSLRRHVLTHTGQKPYKCTYCPLLFTTKSNCDRHLARKHSNKKDANSSSSGVSTGTPNSSTTSVSPGSSASSGSPPDVISTRALALNYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDVCRRRFTLKHSMLRHRKKHNDLSNNNNNSISAPLVPGAEDLSPSATSGDEEGFSASLKHAPSPAELLMHHVKMTNHNNNNINMAGVSKVLMAICDSHVNLKRNFRRKEEEDSGLISNLLGIGDPSIIDKVLLSKSADDAEKLLGVFKNGNKSSNGRT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -