Aruf028546.1
Basic Information
- Insect
- Aptinothrips rufus
- Gene Symbol
- -
- Assembly
- GCA_902196195.1
- Location
- CABIKL010000006.1:22595-28072[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.00023 0.054 14.9 1.7 1 23 94 116 94 116 0.98 2 27 0.0018 0.42 12.1 2.9 1 23 122 144 122 144 0.98 3 27 0.0025 0.6 11.6 5.6 1 23 149 172 149 173 0.95 4 27 0.028 6.5 8.3 0.2 2 23 179 201 178 201 0.92 5 27 0.001 0.24 12.8 0.2 2 23 238 259 237 259 0.96 6 27 7e-05 0.016 16.5 1.0 1 23 265 287 265 287 0.98 7 27 6e-06 0.0014 19.9 2.9 1 23 292 314 292 314 0.98 8 27 0.00045 0.11 14.0 0.9 1 23 324 346 324 346 0.99 9 27 0.13 31 6.2 0.6 1 21 374 394 374 395 0.94 10 27 0.00095 0.22 12.9 4.2 1 23 413 435 413 435 0.99 11 27 0.0009 0.21 13.0 2.0 1 23 485 507 485 507 0.98 12 27 0.13 31 6.2 3.3 1 23 554 576 554 576 0.98 13 27 1.2 2.9e+02 3.2 0.5 2 23 616 637 615 637 0.93 14 27 0.059 14 7.3 0.4 1 23 703 725 703 725 0.91 15 27 4 9.5e+02 1.5 1.6 1 23 752 775 752 775 0.91 16 27 0.029 6.7 8.3 3.1 1 23 806 829 806 829 0.97 17 27 0.041 9.6 7.8 3.3 1 23 849 872 849 872 0.97 18 27 0.019 4.5 8.8 2.6 1 23 902 924 902 924 0.97 19 27 0.16 38 5.9 2.9 1 23 943 966 943 966 0.94 20 27 0.011 2.7 9.6 0.8 2 23 999 1020 998 1020 0.96 21 27 0.00019 0.044 15.2 1.0 1 23 1040 1062 1040 1062 0.99 22 27 0.00074 0.17 13.3 1.6 2 23 1156 1177 1155 1177 0.97 23 27 0.51 1.2e+02 4.3 0.5 1 23 1235 1257 1235 1257 0.93 24 27 0.0012 0.29 12.6 0.1 2 23 1271 1292 1270 1292 0.97 25 27 0.0015 0.34 12.4 0.6 2 23 1317 1338 1316 1338 0.96 26 27 0.00012 0.029 15.7 0.7 1 23 1344 1366 1344 1366 0.99 27 27 0.0068 1.6 10.3 0.9 1 23 1372 1395 1372 1395 0.97
Sequence Information
- Coding Sequence
- CTGCTCATCGAGTCCGTCACGTCGCTGTTCGTCCCTACGCACCTCAAGACCGACCTGGCCGACGAGTACGAGATCGAGTACGACAACAACGGCTGGGACTGGTACGAGGACTGGTCCGGGGCCgggtccggggccggggcgtTCCCCGCGGAGCAGGCGCTGGCCGAGcccgcggccgaggccgagcacGAGGGGCTGATGCAGCCGGTGGTGATGCTGGAGATGATGAGTCTGCCGGCCCAGCGGGagtccagctccggctccagttCCTCGCGCCCGCACCGCTGCGAGGTGTGCCAGGCGCGCTTCTCGGCCAAGCAGACCCTGCTCGTGCACATGCGGCGGCACACGGGGGAGAAGCCCTTCAGCTGCACTCGCTGCTCCAACACCTACCGGCACCGCAGCGCGCTGGCCGACCACGAGCGGACGCACACCGCCAAGCCCTACAAGTGTCCGCGGTGCGCGCGCTGCTTCAGCCACTCCAAGACCCTCGTCAGCCACGTCAAGGACGCCCACCACATCTCCCGCGTGCTCACCTGCGACAACTGCAACTCGTACTTCGTTTCGAGCAGCGCGCTGGCCGAGCATGTGGAGCAGAAGCACAAGACGCACGCCCACCTCCTGCCTCagcccgtccagcagcaggaggtgctgcagcaggtgcaggaggagcagcagctgcccgAGAAGCCCGTGAAGGCCGAGTCCACTGTCTGCTACATCTGCGACAGGGAGTTCTCGACCGTCAGCGGCATGTGGGCCCACACCCGCTTCCACGGCTCCGGCAACCGCTTCCGGTGCCGCCAGTGCCCGTCGACCTTCACCTCCTGGATGAGTCTGCGCTCGCACCTGCGCGCCCACAACAAGCTCGTCCACAAGTGCAAGCAGTGCAACATGCGCTTCGCGTCGCGGAGCTCGCTCTGGGCGCACCTGAAGACCCACGACCGTCAGCAGGGCGGCAACCTGGTGTACCGCTGCAGCCAGTGCCTGGAGCGCTTCGTGGGCCGCAAGAGCCTGTCCGCCCACCTCAAGACGCACAAGGCTCCGGAGGCCGTGGACGCCGCGCTGGCCTCTGACCCGGCCTCTGCCCCGGCGCCTGCGGGTCCCGGCGCCAAGGTGTTCCGCTGCTCCGCCTGCCCTCGCGTCTACAACACCTACAACGGCCTCTACTACCACCGCAAGAACGTCTGCCCTGCTCTGAAGAAGGCCGTCCTCGTCCGCAAGTACCAGCACAAGTACAAGTGCAGCAAGTGCGACGACTGCTTCAAGACCAGGGTGGGGTTGTCCAACCACTCTCGGACCCACGCCATCAAGAGTGAGCCGCCCGCTGAAGTTTATGAAGACCAGGCTGCTCGGCAGGAGCTCGAACTTCAAGACCAGAATGCAACGCGGCTCATTGAAGAGAACTCGGCGAGTCACATACTGGATGCCAGCCCGTCGAAGGTCAAAGGATTCCGATGTGGAAAGTGTTCCCAGCCATTTCCAAATAGGAAGGCTCTGCACGTCCACTCCAAAACTCACTTTGGTGCGATGGTTGTGATGTCAATAGACGATGCCTCGTCTGTAGAGGCAGACGCTCGCCAGAGCCGCGAGGGGGCCGGCATTCCATTGGCCACTTCAGCTGTGAAGAAGTCGAAAGGCTTCAAGGGAAAGGGAGTGTACCGCTGCACCAAGTGCCCTTCGTACTTCCGAAGCTGGAGGTCGCACAGGGCACACGTCCAGTCTCACTCCAGTCCCAGAGTCTTCCAGCACTACAGAGTCCACTACGACGAGCAGCCCTGCGAGGCGGTGGACATGGCCGGGAACGGGACGCGGCCCACGCAGCACGACGCGGCCAGGTCCGTCCGCTGCGTCAAGTGCGGCCAGACGTCCTCCGACGTGGAGAGCCACTGGTGGCACTACAAGGTGCACGCGGGCCTGGATGAGCCCGAGGAGCAGCAGTTCGAGGAGGTGTCCGAGCGGGCCAAGGCCAAGGCCATCGGAGTGCGCTGCCTGTCCTGCCGCGAGGTGTTCGGGGACGTGGACAGCCACTGGTGGCACTACCGGGACCACTACACCGAGGGCGTGGAGGAGGTGTGCGAGGAGGCCGAGTCCAAGCCCAAGGCGTTCCCCTGCAGCAAGTGCTCCGAGGTGTTCCCCGACCGCCGGAGTCGATTCCTGCACTCCGCCGTCCACGTggtgccgcgcggggccgccgtgcaggaggaggaggccgccgaggaGCCGCAGGTGGCAATCGAGGGCACGCGAGGCTACCAGTGCAGGGGCTGCCGGGAGATCTTCCTCGACAAGCAGAGCCACTGGTGGCACTACAAGACCGTGCACTGCCCGGACGCGGAGACGGTGGGCCCCGAGACCTACGAGATCGTCGACCTGGTCGACAAgcacgaggaggtggccgacAAGAAGAGGTCGTACCACTGCAGCAAGTGTCCGGAGGTGTTCGACGACAGGAAGCTGCACCGCGCGCACTACAGGAGTGCTCACGGACCCACAGTCGCACCGGAGGCCTTCGAGGTCCTcgtcgaggaggggaggaggagctacagctgcagcaagtgtccgGAGGTGTTCGCCGACAGGAAGCTGCACCACGCGCACTACAAGACGATGCACGTCAACAAGCCTGCAGACAGCCTGACGGGCGCGGCTGTGAacggcgaggaggagcggccccccgcccccgcgtccaaGACGAAGGGCTTCCACTGCAGCAAGTGTCCCGAGGTGTTCCCTGACCGCAAGAGCCACTGGTGGCACTACAGGGTGCACGCCAGCACCGCGGAGACCGTGGCCGCCGAGGAGGTGGAGCAGAGCAAGAAGAAGTACAACTGCAGCAAGTGCTCCGAGGCGTTCACCGACCGGcgggcccaccacgcccactaCAAGGTGGCGCACAGCGGCCCCACCGAGGAGCCCGCCCAGGAGCCCGCCGACCTGGCCAACGACGACAGCTGCGAGGCCAGCGAGGGGGCGGCCAACGCCAAGGAGGTGCGCTGCAGCAAGTGCCCGCAGGTGTTCCCCGACCGCAGCAGCCACTGGTGGCACTTCCGCATTCACACCGACCCCGAGTTCACCGCGTCGCTGACGGAGGAGATCCCCGAGGAGGTCGTCAAGTACCAGTGCAGCAAGTGTCCCGAGGAGTTCCCCGACAGGAGGAGTCGCACCGCGCACTACAAGACTCACACCAGTGAGGCtgtccccgccgccgcctccaagCCGGGACCGAAGTCTGGTACTCTCAGGTCAGGTCTGAAGTCTGGCCTGAAGACTGGGCTGAAACCAGGCTTCAAAACCGGCTTCAAATCCGGCATCAAGTTCGGCCTCAAGTCTGGCGTGAAGGCCGGCCCTGCTTCCGTCAAGCTGGCGGCCCTCTCCAAGCCGGGGCCGGCCTCGTccaagcccggcccggcctcctccaagcccggcccggcctcgtccAAACTGAAGAGAGGCAAGCAGGTCAAGTGCAGCCGCTGCTCGATGCACTTCTCAACCTGGAAGCTGCTCTGGGCGCACGTGAAGCAGCACCGCCTGCAGGATGGCGAGTCCGCGCTCCAGGACGCGAAGGAGCACAGCGTCAAGGAGGAGGTCGTGGTGAAAGAGGACGCCGTCGGGCAGCAGGAGATCGAGGACAGCGAACTGGAGAGCAGCGTCCAGGAGGTCAGCGATGAGGAGGACGACGGCAACCAGTTCAAGGCCTTCAAGTGCACCATGTGCACCGATTGGTTCATGGGGAAGGCGCCCCTGCGCGAGCACATGAAGACccacgaggaggtggccgcaGCACCGAGCGCCGCGCGCTCCCTCCAGTGCAGCAAGTGCCCGGCGCGCTTCAGCGCCCGCACCGTGCTCTGGGCGCACATCAAGACCCACCGGAAGAAGGTGGACGAGGCCGTGACGCCGGAGGTGAAGACCGAGCCCGAGGAGGCCGTGAGCCGGGTCCTGCACTGCTCCAAGTGCTCGGCCGAGTTCAGCAGCAAGCTGGGGCTGGCCGCCCACCAGCGCGTGCACGCCAGCGTCAAGCCCTTCAAGTGCCAGCAGTGCGAGGCGCGCTTCACGCTGGCCGCCAACATGCTGCGCCACATGAAGTCCCACCTCGGCTCCAAGCCCTTCCGCTGCCGCTACTGCCAGGACACGTTCAGCTCGGCGGCCAAGAGGAAGGCGCACATACGAGAGGAGCACCCGGCCTCGGGCGCCGAGGTGTGA
- Protein Sequence
- LLIESVTSLFVPTHLKTDLADEYEIEYDNNGWDWYEDWSGAGSGAGAFPAEQALAEPAAEAEHEGLMQPVVMLEMMSLPAQRESSSGSSSSRPHRCEVCQARFSAKQTLLVHMRRHTGEKPFSCTRCSNTYRHRSALADHERTHTAKPYKCPRCARCFSHSKTLVSHVKDAHHISRVLTCDNCNSYFVSSSALAEHVEQKHKTHAHLLPQPVQQQEVLQQVQEEQQLPEKPVKAESTVCYICDREFSTVSGMWAHTRFHGSGNRFRCRQCPSTFTSWMSLRSHLRAHNKLVHKCKQCNMRFASRSSLWAHLKTHDRQQGGNLVYRCSQCLERFVGRKSLSAHLKTHKAPEAVDAALASDPASAPAPAGPGAKVFRCSACPRVYNTYNGLYYHRKNVCPALKKAVLVRKYQHKYKCSKCDDCFKTRVGLSNHSRTHAIKSEPPAEVYEDQAARQELELQDQNATRLIEENSASHILDASPSKVKGFRCGKCSQPFPNRKALHVHSKTHFGAMVVMSIDDASSVEADARQSREGAGIPLATSAVKKSKGFKGKGVYRCTKCPSYFRSWRSHRAHVQSHSSPRVFQHYRVHYDEQPCEAVDMAGNGTRPTQHDAARSVRCVKCGQTSSDVESHWWHYKVHAGLDEPEEQQFEEVSERAKAKAIGVRCLSCREVFGDVDSHWWHYRDHYTEGVEEVCEEAESKPKAFPCSKCSEVFPDRRSRFLHSAVHVVPRGAAVQEEEAAEEPQVAIEGTRGYQCRGCREIFLDKQSHWWHYKTVHCPDAETVGPETYEIVDLVDKHEEVADKKRSYHCSKCPEVFDDRKLHRAHYRSAHGPTVAPEAFEVLVEEGRRSYSCSKCPEVFADRKLHHAHYKTMHVNKPADSLTGAAVNGEEERPPAPASKTKGFHCSKCPEVFPDRKSHWWHYRVHASTAETVAAEEVEQSKKKYNCSKCSEAFTDRRAHHAHYKVAHSGPTEEPAQEPADLANDDSCEASEGAANAKEVRCSKCPQVFPDRSSHWWHFRIHTDPEFTASLTEEIPEEVVKYQCSKCPEEFPDRRSRTAHYKTHTSEAVPAAASKPGPKSGTLRSGLKSGLKTGLKPGFKTGFKSGIKFGLKSGVKAGPASVKLAALSKPGPASSKPGPASSKPGPASSKLKRGKQVKCSRCSMHFSTWKLLWAHVKQHRLQDGESALQDAKEHSVKEEVVVKEDAVGQQEIEDSELESSVQEVSDEEDDGNQFKAFKCTMCTDWFMGKAPLREHMKTHEEVAAAPSAARSLQCSKCPARFSARTVLWAHIKTHRKKVDEAVTPEVKTEPEEAVSRVLHCSKCSAEFSSKLGLAAHQRVHASVKPFKCQQCEARFTLAANMLRHMKSHLGSKPFRCRYCQDTFSSAAKRKAHIREEHPASGAEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -