Aruf028539.1
Basic Information
- Insect
- Aptinothrips rufus
- Gene Symbol
- -
- Assembly
- GCA_902196195.1
- Location
- CABIKL010000006.1:4760-10159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00073 0.17 13.3 0.1 2 23 33 55 32 55 0.95 2 23 0.00014 0.033 15.6 0.8 1 23 61 84 61 84 0.98 3 23 0.59 1.4e+02 4.1 2.7 2 21 165 184 165 186 0.94 4 23 1e-05 0.0025 19.1 1.6 1 23 193 215 193 215 0.97 5 23 0.0098 2.3 9.7 0.2 1 23 221 244 221 244 0.93 6 23 0.019 4.4 8.9 0.7 1 23 250 272 250 272 0.97 7 23 0.00011 0.025 15.9 6.0 1 23 278 300 278 301 0.95 8 23 5.7e-05 0.013 16.8 4.2 1 23 484 506 484 506 0.96 9 23 0.0057 1.3 10.5 0.4 1 23 512 534 512 534 0.94 10 23 5.8e-06 0.0014 19.9 0.4 1 23 539 561 539 561 0.98 11 23 3.8e-05 0.0089 17.3 1.0 2 23 564 585 563 585 0.97 12 23 0.00022 0.052 14.9 0.6 1 23 592 614 592 614 0.97 13 23 0.00094 0.22 13.0 0.2 1 23 638 660 638 660 0.96 14 23 0.00015 0.034 15.5 0.6 2 23 666 687 665 687 0.97 15 23 0.0024 0.56 11.7 0.1 2 23 692 713 691 713 0.96 16 23 1.3e-06 0.0003 22.0 1.4 2 23 721 742 720 742 0.96 17 23 0.00034 0.081 14.3 0.0 2 23 747 768 746 768 0.97 18 23 8.3e-08 2e-05 25.7 1.1 1 23 773 795 773 795 0.98 19 23 0.0014 0.33 12.4 2.3 3 23 803 823 801 823 0.97 20 23 5.3e-06 0.0013 20.0 0.3 3 23 830 850 828 851 0.94 21 23 4.4e-05 0.01 17.1 0.2 3 23 860 880 858 880 0.98 22 23 1.1e-05 0.0026 19.0 2.2 1 23 886 908 886 908 0.99 23 23 0.00051 0.12 13.8 0.9 3 23 916 936 915 936 0.98
Sequence Information
- Coding Sequence
- ATGCCCCAGCTGGTGCTGCACGTGCCGGGGCAGGTGTCCGGCCAGGTGTCCAGCCAGGTGTCCAGCCAGGTGTCCAGCCTGGCCAGCAAGTCGCTGCAGTGCCCGCAGTGCCCCATGGTGTTCCGCTTCAAGGTGGGGCTGGACAGCCATCTGAAGCTGGTGCACGGCATCCAGCTGCCCTACTCGTGCAGCCTCTGCCCGGGCGTCTACCGCTACCGCAAGAACCTCTACATGCACATGCGCAAGGCACACGGTGAACTCTCGGGCGGCGAGCAGGATGTGGAGGAGGTGGCGGGTGGCGTTGCGGTGGAGCAGGTTGAGGTCGTGGACGATGAGGAGGTGGACGTGGACGGCGAGGGCGAGCCCGGCCCCGTGctctcggcccggccgcgctgCGTGCGCCGGGTGCTGGCCACGCCGCCACCCTCGGGCTCTGACGCCGAGGTGGACGTGGAGGGCATGTCGCCGTCAGAGGAGGGGTCGCCGTCCGCTCGCTGCCCGCTGTGCCCGGCCGCCTTCTGGCGCTCGGAGCACCGCACCAGACACCTGCGCTGCCACCTGCCGCCCACCCGGCcgcacagctgcagcagctgcgacgCCTCCTTCAACCGCAGGGACCAGCTGCAGGCGCACCTGCGGCTGCACTCGGGAGACTGGCCGTACAGGTGTGTGCGCTGCGGCGAGGGCTTCCAGACCAAGGAGCAGATGCGCGGCCACGCGGCGAGCCGGCACGGGGCCGCGGCGCCCTtccgctgctcgcgctgcgaGGCCACCTTCCTGCGGGCCCTGTCCCTGCGCCGCCACGAGCGAGGGCACAGCGGCGAGAAGCCCTTCGCCTGCCCGCACTGCGACAAGCGCTTCACCTTCTCGCCCTCCAAGCGGCGGCACCTCAAGACCCAccacgccgagcaccgcgccgagcaccgccgcgctgcctccTCGGGCTCAGACTCTGATCACCATCCTGACTGCGTCAAcgcggccccggcggccccggccccgAGACACCCGTACAACGACGTGAAGCTGCTGAGCGAGGTGGCGCTGGgactgctgcccggcctgcccggcgcgCCTGGCGTGCCCGTCATCTCGTCGGTGGGCTTCGTCAAGGACGAGGTGCACATGGACTTCATCAAGGAGGAGCCCCGCGACGACACGGTGCTCATGGACAACGGGctgcccctgccgcgccccgagGAGAACGACGACCACGTCCACGACGACGTGTTCGGGGACGCCAACGACGACGTGCTGATGGGCGACGAGCCCAACCTCAGCAACGAGCACCTCAACGACGACGACCGCGACGATGCCGCCGTGGGCGGcctggaggacctggaggacAGCGAGGGGGGCGAGGATCAAATAAGGCGCTGGCTCTGTCACGGTTGGGACTCTGATGTGATTGCTGAGAGGGAACTGAAAgtgcgccgcTCGAAGCGCAAGTTCTTCTGCAAGCACTGCCCGGCCATGTTCAAGCGGCCCAACCACCTGAAGAAGCACGAGCTGGTGCACGGCGCCAACAAGGCGTTCGCCTGCCCGCACTGCACGGCCAGCTTCGTGTCGGACacgcgcctgcagcagcacgtgGCGCTGCACACGGGCGACGTGTACCGCTGCGAGAAGTGCGGCGAGGCGTTCGGCTCGCAGGCCCAGCTCAAGGAGCACAAGACGACGCACTCGTGGAAGTGCCCCTACTGCACGTCCGTGTTCAGCACGCTGCACGGCCTCAAGATCCACGTGCGCTCGCACAACAAGGTGCTGCAGACGTTCGCCTGCACCGAGTGCAACGACAACTTCCCCAGCAAGGAGGACCTGCGGCTGCACAAGCGCACGCACCCgacggcgcccgccccgcccccgccgcccgccgccgaggTCGAGGACGTGGACTTCGACGCCAAGCTCTTCCCCTGCGACGCCTGCGACGAGAAGTTCAAGACGTCCTtcgacctgctgctgcacgcCAAGGAGCACCTCGACAAGGAGATCAAGTGCGACTCGTGCCCGGCCAGGTTCAGCAGCCGCAAGGAGCTGCGCGACCACGCGCGCCGCCACGACAAGGAGATCAAGTGCCCCCGCTGCGACCTGACCTTCAAGTCGCAGATCCAGGCCGACGTGCACCTGGCCACGCACGACATCGACGACGAGCACCTGCGCTGCGAGTTCTGCCCCAAGGTGTTCGCCACCAACTACCACCTGCTGCGGCACATGGACTCGCACCAGCAGAAGCTGGAGTGCGGCGAGTGCCAGGCCGTCTTCCCGAGCCGCGCCCAGCTCGAGCTGCACGAGAAGACGCACACGGAGGGCGCCTTCAAGTGCGAGGACTGCGGCAAGCGCTTCCCCTACAAGTCGCTGCTCACCGCGCACACCCGCCAGCACGACGGCGACAAGCCCTTCGGCTGCGACCAGTGCAGCGTGCGCTTCAAGTCGGAGAAGCACCTCATCAAGCACTCGCGCATCCACCAGAACAAGACCATCAACTGCGGCGACTGCGGCGCGCCCTTCATGACCAACTACCAGCTGGCCGAGCACATGCGCACGCACCACGTGCGGAAGAGCAAGACCTACTGGTGCGAGGAGTGCACCGAGTCGTTCCCGACCAAGCTGCTGCTCGAGCAGCACCTGCGCACGCACCCCGCCAAGACGCTCTTCCAGTGCGAGCACTGCACGCTCAACTTCGCCACGGACtacggcctgcagcagcacatgCGGACCCACACGGACTACCGGCCCTGGCTGTGCGGCTACTGCGAGGCCAGCTTCACCATGAAGGAGCACATGGTCCGCCACATGAAGGCCCACAAGAAGAAGTAG
- Protein Sequence
- MPQLVLHVPGQVSGQVSSQVSSQVSSLASKSLQCPQCPMVFRFKVGLDSHLKLVHGIQLPYSCSLCPGVYRYRKNLYMHMRKAHGELSGGEQDVEEVAGGVAVEQVEVVDDEEVDVDGEGEPGPVLSARPRCVRRVLATPPPSGSDAEVDVEGMSPSEEGSPSARCPLCPAAFWRSEHRTRHLRCHLPPTRPHSCSSCDASFNRRDQLQAHLRLHSGDWPYRCVRCGEGFQTKEQMRGHAASRHGAAAPFRCSRCEATFLRALSLRRHERGHSGEKPFACPHCDKRFTFSPSKRRHLKTHHAEHRAEHRRAASSGSDSDHHPDCVNAAPAAPAPRHPYNDVKLLSEVALGLLPGLPGAPGVPVISSVGFVKDEVHMDFIKEEPRDDTVLMDNGLPLPRPEENDDHVHDDVFGDANDDVLMGDEPNLSNEHLNDDDRDDAAVGGLEDLEDSEGGEDQIRRWLCHGWDSDVIAERELKVRRSKRKFFCKHCPAMFKRPNHLKKHELVHGANKAFACPHCTASFVSDTRLQQHVALHTGDVYRCEKCGEAFGSQAQLKEHKTTHSWKCPYCTSVFSTLHGLKIHVRSHNKVLQTFACTECNDNFPSKEDLRLHKRTHPTAPAPPPPPAAEVEDVDFDAKLFPCDACDEKFKTSFDLLLHAKEHLDKEIKCDSCPARFSSRKELRDHARRHDKEIKCPRCDLTFKSQIQADVHLATHDIDDEHLRCEFCPKVFATNYHLLRHMDSHQQKLECGECQAVFPSRAQLELHEKTHTEGAFKCEDCGKRFPYKSLLTAHTRQHDGDKPFGCDQCSVRFKSEKHLIKHSRIHQNKTINCGDCGAPFMTNYQLAEHMRTHHVRKSKTYWCEECTESFPTKLLLEQHLRTHPAKTLFQCEHCTLNFATDYGLQQHMRTHTDYRPWLCGYCEASFTMKEHMVRHMKAHKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -