Aruf031697.1
Basic Information
- Insect
- Aptinothrips rufus
- Gene Symbol
- bab2
- Assembly
- GCA_902196195.1
- Location
- CABIKL010000012.1:6587-10796[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-12 9.7e-09 35.7 0.0 1 39 374 413 374 417 0.90 2 4 4e-14 2e-10 41.1 0.1 1 39 428 466 428 469 0.94 3 4 1.2e-18 5.8e-15 55.7 0.0 2 45 484 528 483 528 0.97 4 4 6.6e-20 3.3e-16 59.6 0.0 1 43 535 578 535 579 0.97
Sequence Information
- Coding Sequence
- ATGTGCGGACCTGCTGTGGACATCAGTGCAGccatggcagggcagcactACTGTCTGCGGTGGAATAATTACCAATCTAATATGACATCAGTTTTCCATCAATTACTTCAAACTGAAGCTTTTGTAGACGTAACACTTTCGTGCAATGAAGCTTCCTTAAAGGCACACAAGGTTGTGCTGTCAGCATGCTCCTCCTACTTTCAAAAGCTCTTACTTGAAAATCCGTGCAAACATCCTACCATTATAATGCCACCGGATGTTTGTTTTAATGATCTGAAATTTATAATTGAGTTTGTTTATCGAGGTGAAATAGATGTATCTCAGGCAGAGCTTCAGAGCCTCCTTAAAACAGCTGATCAGTTAAAAATTAAAGGCTTATGTGAAATTCCAGAGGGTAGGGATGGCGGTGTAGCTAATGGTATGACTGTTAACGTCGGCATGACAGTAGCCACTTCAACTGATGAAGACCACAGTGGAGGTGGCCACATGACGACAGGAGATATCCCTGTTGTCATACTGGAGAGCCGTCCTCACTCCCATGGACATGCTGGGCAGCCCCAAATGCACCCTCACCTCCAGCACCATCAGCTTACAACAGCAGTCTCCCCAGTCCTTCTCTCCCATCAAGGCCACATACCTCACGGCCTTGCGCTTCCTCCTCCTCAGCCTCAGCAAATGGAGCAGCACAACTCGCATTCAGTCCATTCGGGGCACTCAGCTCATTCTGCCCACAGCAACAGTGCCAGTGATGTTGAAATGCCCCCTGAAGTGACACCACCTGCTCCCTCTGCAACCCCTGTGCCCCTTATGGCCCTTCATGATGATAACATACCAAGGAGCAGAGATATGGCGGtggaCACATCAGGAATCACCCATACAAGTGAAGACGATGTGAAAGTGAAGTTTGAAACTTTACGTGCTATGGAGCAGGGTGATACAATTAACATGGACAGCCACATGTCTGATCGGGAAGACCATACCATGCACACTATGATGATTACACCTGAACTATTAGGTCTAATCCCATCTTCTTCCGGCCATTCAACAGATTCTACAGCTCCTTCCCCAGCAGATGTACAGCCAGAGCAACCAAAAGGTCCCGGTGGACCTAAGACTTGGACTCAGGAGGATATGGATGCTGCTTTAGATGCTCTGCGCACACAAAATATTTCGCTAACTAAGGCAGCTAGCATGTTTGGCATACCATCTACTACTCTTTGGCAACGAGCTCATCGCTTAGGAATTGACACTCCCAAGAAAGAAGGTCCTAACAAATCTTGGTCTGAGGATAACTTGAATAATGCTCTGGAAGCTTTGAGAAGTGGATCAATTTCTGCGAATAAAGCTAGCAAAGCTTATGGTATACCAAGCAGCACACTCTATAAAATTGCTCGAAGAGAAGGGATCAGACTTGCAGCTCCTTTCAACGCTGCGCCTACTACTTGGAATCCTGATGACCTTGAGAGGGCACTGGAGTCAATCAGAACAGGGCAAACCTCAGTCCAGAGAGCAGCGGCTGAATTTGGTATTCCTACAGGAACATTATACGGCCGGTGCAAAAGAGAAGGTATTGAGTTATCTAGAAGTACTCCCACACCCTGGTCAGAGGATGCAATGCTGGAAGCTTTGGAGTCTGTGAGAGTTGGACAGATGAGTATTAACCAGGCGGCTATTCATTACAATTTACCTTATTCATCCTTGTATGGAAGATTTAAACGTGGAAAGTACGAGGCAGATCATCCCAGTGGCGATGAGTCCATGGATGCCCCTGTGTCCCCAAACATTCAACCTCAAATAATGGTCTTACCCTACTCTGTTAGTGTATCTCAGCACACACAacagcagcatcaacaacaGTCAGCGCAACAACAAGCCCAAGCTGCCGCAGCCCAACAacaggctcagcagcaggcggcTCAGGCACAAcaagcccagcagcaggcccagcaggctgcagcagcacagcaggcagcacagcagcaggcgcagcaggctgcagcccagcaggcagcgcagcaggcagcccagcagcaggcccagcaggtggcggcagcccagcaggcagcgcagcaggcagcgcaggcccagcagcagcaagcggCGCAGCAGGCGCAGGCCCAGGCACAAGCTCAGGCACAGGCAGCTGCACAGCACCAGATACACcaacagcagcaggccgcagtggcacaggctgcccaggctgcgcAGGCTGTGCAAGCAGCGCAGGCTCAGCATTCCATGGCGCAGTACCAGCCCCACAGTACTAGTTGA
- Protein Sequence
- MCGPAVDISAAMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLSCNEASLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPPDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEIPEGRDGGVANGMTVNVGMTVATSTDEDHSGGGHMTTGDIPVVILESRPHSHGHAGQPQMHPHLQHHQLTTAVSPVLLSHQGHIPHGLALPPPQPQQMEQHNSHSVHSGHSAHSAHSNSASDVEMPPEVTPPAPSATPVPLMALHDDNIPRSRDMAVDTSGITHTSEDDVKVKFETLRAMEQGDTINMDSHMSDREDHTMHTMMITPELLGLIPSSSGHSTDSTAPSPADVQPEQPKGPGGPKTWTQEDMDAALDALRTQNISLTKAASMFGIPSTTLWQRAHRLGIDTPKKEGPNKSWSEDNLNNALEALRSGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPDDLERALESIRTGQTSVQRAAAEFGIPTGTLYGRCKREGIELSRSTPTPWSEDAMLEALESVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYEADHPSGDESMDAPVSPNIQPQIMVLPYSVSVSQHTQQQHQQQSAQQQAQAAAAQQQAQQQAAQAQQAQQQAQQAAAAQQAAQQQAQQAAAQQAAQQAAQQQAQQVAAAQQAAQQAAQAQQQQAAQQAQAQAQAQAQAAAQHQIHQQQQAAVAQAAQAAQAVQAAQAQHSMAQYQPHSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00733267;
- 90% Identity
- iTF_00151485;
- 80% Identity
- iTF_00151485;