Atae037534.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- PGBD1
- Assembly
- GCA_949987775.1
- Location
- OX465265.1:5075265-5085273[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.3e-05 0.0074 18.1 2.0 1 23 963 985 963 985 0.99 2 12 9.2 1.3e+03 1.6 0.3 6 14 1040 1048 1038 1052 0.87 3 12 0.00095 0.13 14.2 1.1 1 23 1067 1090 1067 1090 0.97 4 12 0.0011 0.15 14.0 1.0 1 23 1094 1116 1094 1116 0.98 5 12 0.12 17 7.5 0.4 2 23 1138 1160 1137 1160 0.95 6 12 0.0058 0.8 11.7 1.7 1 23 1164 1187 1164 1187 0.97 7 12 0.088 12 8.0 0.1 2 23 1210 1232 1209 1232 0.93 8 12 1.8e-05 0.0025 19.6 2.9 1 23 1241 1263 1241 1264 0.96 9 12 0.016 2.2 10.3 2.0 2 23 1280 1301 1279 1301 0.96 10 12 0.011 1.5 10.8 0.3 1 23 1307 1329 1307 1329 0.96 11 12 0.9 1.3e+02 4.8 3.1 1 22 1335 1356 1335 1359 0.90 12 12 0.0052 0.73 11.8 0.1 3 23 1413 1433 1412 1433 0.98
Sequence Information
- Coding Sequence
- ATGGAGGCTCAAACATCAACTGATGGAACTGTTatagaaattaaaattgaaGAAACCACCGAAGACATGGAtgaaattaaaactgaaaatgatcaaatatatttaatgGAACTAGAAGACTTGTTGCCTAACACACAAAGCAATACACAGTCCAATGACAATCCTTATGATGATTTACAATTTGTGCTAAAAGAGGAAGCAATGGTCATGGAATCAGAAAATACTAGTCAAACAGTGTTGAACAGTGAAgttgttaaaaatataatagtaGAAAGAAGTAATactcaaaataattcaactgaCACCACCATAGATGTAGATAATCCTAATattaaagaagaaaataaagatGGAGTGGTGTCTTATGATTATCCCACTTTTGATGATGCTGAGAGTATGGATAGTAATGACGCAGCTGCCCTAGGCAATGTGGAAGCATGTCTGCAAGACGAAATCGATATTAAATTGGAAAATGAAGGGAATTTTGAAATGTCTAGATATAAAATTCTGGACCTGGACAAGGATTCTGAAGAGGAATTCGACCTAACCATGTATGGAGTCTGCGAAGACCAAGCTGAGAACTCTGATATCGGTGGTGATTCAGACCCAGAAGATCCTATGAAGTATAAAAAGAACAAACTTCCAGAGAAGCTATTTAACCCTGGTTCGAAAGTTCCGCATTCATTAACCACTTCCAACACTCCATTTCAAGCACAGCCGTCTGAGTTTGTACCTTCACCACATTTTGTACCTCTACAGAACAGAGTAGATGTAAGATTATTGAAAAACAAAGAAGATACTAATTGTGACAAAACTGCAGAAAAATATCGATGTCGATTGCATGCTAAACGAATTGATTTCTCAGATACTGAAGAAAACGAGGAGATAGACGAGGATCCGGAGTCAGAAAGCGAGGATGGGGAAAAAGATCCATTGGATATTTCGAATGCAGAGCAGGCTTGTAAAGATTCATCAGTTTCGGTCGTAAACCGACCTGACGGCGTTCGGACCAGCGCCAGATTAAAGACTAAACCGCAGCACAAAACGGCACAGGCCACAGAACAGAAACGCCACAGGCCAGCAGGCAAACCACGCACAAACCAATCTGTTAAGCCGTATCATTTTCGCAAATCTTTTAGAAGTCCATTAGAGTACAAAGGTCACAAATTTACCACTCACGCTGGAATCAATTTTGAAGTTGATTTATCGTCACCTTTACAAATATTTATGCTATTCTTCACGCAAGAtgttttcgaacatattttaGATCAGACCAATTTATACTCTAATCATAAGCTGAACCTTTGCATGATGGAGTTGCGTGCATTCTTTGGCATGCTTATAGTCATGGGTTTCCATGTGCTCCCTACTATTCGCCATTATTGGTCTACTGACCCAAATTTTACATGTCCTCGTATATCAGGAGGTTTGATGAATCTCAAAAGGTTTCTGAGAATACTAAAATATTTACACCTGAACGATAACTCTACGATGAAACCACGTGATGATCCCGAGTATGACAAATTGCACAAGGTGCGGCCTCTACTCAAAATGTTGTCGGACAATTTTAGAGACGTTTTTACCCCATCTAGATTTTTGAGTATAGCCGAGAGTAAGGTGCCGGTAAAAAGTCGGGCCCTGGTGAAACGTTCGAGTCGTGGTTTGAAAGTGTGGGCGTTATGCTGCTCCGTCACGGGCTACATGTCTTGTCTAGAAATATACAGCGGCGCGACGCCCGGCGCGAGTTCCGACTCGGGACTAGGCGAGCAAGTGGTTCTCAAACTCACTCAGGCTTTCTCCGGTCTCGGATTCTGCGTCTTTTTCAATCACTTCTTTAACTCTCTAACCTTACTTACGAAGCTTTTGGCGCGCAAAATATTTGCTTGTGGGACGTTACGGGCGACGACGAAGCATTTCCCCAAAGAATATCTGCTCGAGGACAGGCGTCTCGCTGCTGGTGAATTTGACAGTGTTATGGACGAGTCGATATCGGTAACTAAATGGAAGTGTGGCAGGAAATGTGTGATAATGGGATCGAATATGCACGACGGATCAGTGATCAGGTCAGCAATGCGAACCAACCCTGATGGTAAAAAGGAGCGAGTGAGATGCCCTAAGACCGTCGCCGACTATCACTCCCATAAAGATGGTGTAGATAAGTTTGATCAGCTGACGTCAGCGTACACAGTATCCTGGAAAAGTCGCCGTTGGTGGATGAAAATTTTCTACTACCTTCTGGACTGTTCTATTGTAAATTCGTACATAGTTTACCGCAATGTAGCCGAAGACGTACTACCACCCTCTCAGATCCTGTCGCATCTGGCGTTTCGGAGTAAGTTGGCTGATGAGCTCATATCCGATTATTCAACCTGGAGGAGCAAGTTTGTGCTTTCAGAGCGTCCAAATTTCGACTCGGCAGTGCCTCATTTCCCTGAAAAAACTACGTGCAAGCGATGTGCTTACTGCAGTTCTAAGAAGCGCCAGGAGCTACAAAAGGATAAACTCGCCACAGCTTCCATCAAATTAGAATTGGATGTGACATTACCAGAAACACACATTACTTCGAACCATATTATACCAGATGACGTCAGCGACACGGTAAGGAAATACAATTTCACTACAATTCCTGATGATGTTGTCAATGAAATGGATCATATACCAACATCCAGTGTAAATGGCGACCTATACGCCGATAACGCTAATAATTACGATGGTAACCGCGCAAATTATGAAGATTGCGACGATTTAGATACAAAAATCGACCCAGAGTCTTTCCTAACAGAGAACAGTTCTTGTCTTGTGCCGACTGAAGATTTCCAATTAAATTCTATCACAGGTAACATGGCATCACTTGAACAACAAGTTTACGAGTCGATGAAGCGAAAATATAAATGCACACAATGTACAAACACTTACGCAAATAAGAGGGGTTTGCAAAGACACATGAAGGTCCACCAGACAATAGATAACTATAAAAACGGCGTAATTAAAAGGAAGGAATCACGTAAAAAGAATTTGATTGCTAAAATTAAGATGGAAAGAGAATGTTACGGCATGCCTGATGAAGATGAGGCAGATCTCAAACAGGATACTAAACCCGAGGGATATGAATGCTCTTGCGGTAAAATTTTCAAACGTCGAAGCAGAATGGAAACGTGCCTACGCTCACACGAATTTTACGAAAACAATTCCAAATGTTTCTCTTGTGTAACATGCGCTAAACAGTTTAAAACTAAAGATGAATTAGCGCTACATAGGAAGAGATTACACCGTAAGAAATTCCCTTGCAAGTTCTGTCCAACGGATTACGACACGCGTAAAGAATTGTTCAAGCATCTACAAATACATCAGAAAGTCCAACTCTTAGAGTACAAAGTTATAGAAGAAATAGTTAACGGAAAACAGAAGTTACAATGCTTCGCGTGTTCGAAAATATGCGCCGAGTTATCTGAACTTAAGATTCACGTGATGACGGACCATAAAAGTCCTTATTCGTGTCCCCATTGCAAGAATACATTTCCAAAAATCATAGATTATGCGAATCATATGAAATCGTACCACCCAGACGTGAAAGGTCAGTCGGTTGTGAATGTTCTAGAAGCGTTCTCGAGGCTCGTTAAAAAGTGGAAATGTGAAGAGTGTAACATACAGTTTTTTGAAGCCGATAAGTTGGCTCTGCATCAAATCGAGCAGCATAGTCCGGAGAAATCAGAAGCGCAGTTCCAATGTTCGGATTGCAGAAGAGTATTTATTACCCAGAAAGGGTTAACGTCTCACAGAAGGATACACCACGCATTAGAAGTAGCAGAGGAAGTGAAACCAGAGGCTTTAGGTATTATGTGTTTAGAGTGTAGAAAGATTTGCAAAGATATGACAGCTTTAACTTCGCATATGAGGTTTCATTCCCCAGATCGGAAGTACCCCTGCAAGTTTTGCGACTTCCGCTTCGCAACGCCGGAGAAAAGGAAAGCGCATGCAGAAATTCATACAGGGGATATGAAATACGTATGTTTTATATGCGAATATCAATGTAGCTCAGAAAACAGattaaaacaacacaaaatgTCGTTAAAACATGCTAATATCAAAGAGTACCTGTTGACCGGGAAACCCTTGCTAGAAGAGTCGAGTTCTTCAAAAGATAAGAGAGAGAATGTGAAAAAGAGAAAGAAAGACGAGGAAGATGTAAGTGAAAGTGATAGCGATAGTCCGCTAAGTGAAAAAGACAATAAAGCTTGTGACATTTGCGGAGAGAAGTTCGCTAGTGAGAAATTGATGTTAGAGCATAAACAGACACACCCTTTTATAGAGTTTCCTAATGAGGATACACCTACTAGAATATTCTTTAAGTAA
- Protein Sequence
- MEAQTSTDGTVIEIKIEETTEDMDEIKTENDQIYLMELEDLLPNTQSNTQSNDNPYDDLQFVLKEEAMVMESENTSQTVLNSEVVKNIIVERSNTQNNSTDTTIDVDNPNIKEENKDGVVSYDYPTFDDAESMDSNDAAALGNVEACLQDEIDIKLENEGNFEMSRYKILDLDKDSEEEFDLTMYGVCEDQAENSDIGGDSDPEDPMKYKKNKLPEKLFNPGSKVPHSLTTSNTPFQAQPSEFVPSPHFVPLQNRVDVRLLKNKEDTNCDKTAEKYRCRLHAKRIDFSDTEENEEIDEDPESESEDGEKDPLDISNAEQACKDSSVSVVNRPDGVRTSARLKTKPQHKTAQATEQKRHRPAGKPRTNQSVKPYHFRKSFRSPLEYKGHKFTTHAGINFEVDLSSPLQIFMLFFTQDVFEHILDQTNLYSNHKLNLCMMELRAFFGMLIVMGFHVLPTIRHYWSTDPNFTCPRISGGLMNLKRFLRILKYLHLNDNSTMKPRDDPEYDKLHKVRPLLKMLSDNFRDVFTPSRFLSIAESKVPVKSRALVKRSSRGLKVWALCCSVTGYMSCLEIYSGATPGASSDSGLGEQVVLKLTQAFSGLGFCVFFNHFFNSLTLLTKLLARKIFACGTLRATTKHFPKEYLLEDRRLAAGEFDSVMDESISVTKWKCGRKCVIMGSNMHDGSVIRSAMRTNPDGKKERVRCPKTVADYHSHKDGVDKFDQLTSAYTVSWKSRRWWMKIFYYLLDCSIVNSYIVYRNVAEDVLPPSQILSHLAFRSKLADELISDYSTWRSKFVLSERPNFDSAVPHFPEKTTCKRCAYCSSKKRQELQKDKLATASIKLELDVTLPETHITSNHIIPDDVSDTVRKYNFTTIPDDVVNEMDHIPTSSVNGDLYADNANNYDGNRANYEDCDDLDTKIDPESFLTENSSCLVPTEDFQLNSITGNMASLEQQVYESMKRKYKCTQCTNTYANKRGLQRHMKVHQTIDNYKNGVIKRKESRKKNLIAKIKMERECYGMPDEDEADLKQDTKPEGYECSCGKIFKRRSRMETCLRSHEFYENNSKCFSCVTCAKQFKTKDELALHRKRLHRKKFPCKFCPTDYDTRKELFKHLQIHQKVQLLEYKVIEEIVNGKQKLQCFACSKICAELSELKIHVMTDHKSPYSCPHCKNTFPKIIDYANHMKSYHPDVKGQSVVNVLEAFSRLVKKWKCEECNIQFFEADKLALHQIEQHSPEKSEAQFQCSDCRRVFITQKGLTSHRRIHHALEVAEEVKPEALGIMCLECRKICKDMTALTSHMRFHSPDRKYPCKFCDFRFATPEKRKAHAEIHTGDMKYVCFICEYQCSSENRLKQHKMSLKHANIKEYLLTGKPLLEESSSSKDKRENVKKRKKDEEDVSESDSDSPLSEKDNKACDICGEKFASEKLMLEHKQTHPFIEFPNEDTPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -