Atae012396.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465244.1:23626937-23654705[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.039 5.4 9.1 0.6 1 23 223 245 223 245 0.97 2 13 0.00075 0.1 14.5 8.0 1 23 252 274 252 275 0.95 3 13 2.5 3.4e+02 3.4 2.0 1 14 279 292 279 301 0.76 4 13 2.5 3.4e+02 3.4 2.0 1 14 305 318 305 327 0.76 5 13 0.062 8.6 8.4 1.8 1 23 331 353 331 353 0.97 6 13 1.5 2.1e+02 4.0 1.4 1 23 358 381 358 381 0.82 7 13 0.0076 1.1 11.3 0.4 1 23 385 408 385 408 0.94 8 13 0.77 1.1e+02 5.0 0.1 3 22 422 441 421 445 0.89 9 13 1 1.4e+02 4.6 0.4 2 23 501 523 500 523 0.94 10 13 0.0094 1.3 11.0 1.0 2 20 539 557 538 560 0.89 11 13 5.4e-06 0.00076 21.2 1.6 1 23 566 588 566 588 0.99 12 13 0.00012 0.017 17.0 5.9 1 23 595 617 595 617 0.95 13 13 4.7e-05 0.0065 18.3 4.1 1 23 623 646 623 646 0.95
Sequence Information
- Coding Sequence
- ATGAGCACTGTAGACCAGCTCTCCCAAAACAGCATAAAAAGTATCGACCGGGAAAGCAACCAACTGACCTCACCATTGCAAGCGAAAACTTACGAACCGAACCATTGCGACATATACATAGActccacagacatacacacagacaaACCAACAATCACGGAGGTAAACGTAGACAACGTCGACATAAAAAACGAAACTGACTTCATCAGTGAAGATGTCCCTGAAGAACCGGTTAAAGAAGAACCATGCGACGAAGAAACATTTGATGAAGAACCCACTCATGAAGAATCGCGTGGTGAAGAAAGTGATCAGAATGAAAAAGTTGGTGTTGAAGATGATGAGATGAGATATGATGATTTAATTGAAGGTGATAAAGATTTCGCCGCTTCTGAAGATGATTTCTCCTCTGATGACAGTTTGCCGCTAGAAATAAGTAGAACTAAAAAGAAGaaaaaaCCAAAACTCCAAAAAGGAGATTCTGTCAAAAAAGTCCGCAAgcgaaaacttaaaaaacaaacCACAGAACCAAAAATAGATAGAAGGAGGAAACCATTTCTAAACGACGATTTGAACGAAACATTATTTTCAATAACAGACTTAACCTTTGAGGAGCAAGTGGCCGAGATATTGAAGCGACAAGACAGTGCTAATTATAAAAATGCTGTTTTTAAATGCACGGAATGTTTTAAAGGATTCCTGGATGAAGATGCTTATAGTGGGCATATGAGTCGGCATACTAAGgatTGCGGAGAATTCCGCTGTGATATTTGCAAAACCCATTTCAAACACCCGCACGCGCTACGTAAGCATATCACGGCACACCACACGCAGCGGTTCAGCTGTAACCAGTGCCCATACGTAACCACCCACAGGTACACACGGCTACATATCACGGCACACCACACGCAGCGGTTCAGCTGTAACCAGTGCCCATACGTAACCACCCACAGGTACACACGGCTACATATCACGGCACACCACACGCAGCGGTTCAGCTGTAACCAGTGCCCATACGTAACCACCCACAGACAGACAGCACGACTACATGAAAGATGGCATAAAGGAACCAAGTACCAATGTCCACACTGTCCTGACGAATTTCTTAAGTTCACGACGTACATGGGCCACATCCGGATAAAGCACCCCTCGGACTTCGTCTGCCAACTCTGCGGGTACTCCTTCGTCTCAGAGAAGGGGATCGAACTGCATAAGAAGCTCAAACACAGACTCGACAACGACGAgATCCCCCCCGACGGCCCGTACTGCGCGGAGTGCGGCGTGCGGTTCGTGTCGGTGGATGCGCACGCGCAGCACATGCGCGTCTCGGCGCGACACAACCACACTGACAAAGAACAAAGAGAATCGAACAAGCCTAAAAAGGGGAGGAAATCAAAAGAAGCGAAGGAGAGGGAGAAGAGAGCGAGAGAGAAGAACGAGAAGGACCTAGGAGAGAGCAGGAGAGTGTTCCCGAGCCAAATGAGGAAGGCAGAGGGACCGATACCTTGCGAACAGTGCGGTATGCAACTGGAGGACTCTCGCGCGTACCACGGCCACTTCCGACGGATGCACCCAGACAAGAACCGAACCAACTACCCCTCGATGAAGTCACCATGCATGTGCGAGGTGTGCGGCAGGATGTTCCAGAGCTACGCGTTGTTAAAAGACCACACATGGACCCACACAGGGGAGAAACCATTTAAATGTAACGAATGCGACAAGAGCTTCAGGATGAAACAACGACTGGTGGCCCACCGGCGGGTGCACCAGCAGGTGAAAGCGAGCTATTTGTGCAATCTGTGCGGGAAACACTTCTCGACACACAGCAACCGACAGCGGCACATGTTTATCCACACAGGCCTGAAGCCGTTCAAATGCGAGATGTGTGGCAAGTGCTTCAAACACGCGAGCGAGAAGCGCGCTCATATCACATACGTACACCTGAAGAAACCCTGGCCCAAGCGGAGCCGCGGGAAACGACGGGTCGACAACAGGCAGGGGCCGGTGCCGACGGGTGCGAGCGAGATGGATGTAGTGCAGCCGCTGTGGGCGCCCTGCGACCCCAAACTAGACCACATCAACAACATCATCGAGGACAAACCACTCTATTACAACTTGAAGATATAA
- Protein Sequence
- MSTVDQLSQNSIKSIDRESNQLTSPLQAKTYEPNHCDIYIDSTDIHTDKPTITEVNVDNVDIKNETDFISEDVPEEPVKEEPCDEETFDEEPTHEESRGEESDQNEKVGVEDDEMRYDDLIEGDKDFAASEDDFSSDDSLPLEISRTKKKKKPKLQKGDSVKKVRKRKLKKQTTEPKIDRRRKPFLNDDLNETLFSITDLTFEEQVAEILKRQDSANYKNAVFKCTECFKGFLDEDAYSGHMSRHTKDCGEFRCDICKTHFKHPHALRKHITAHHTQRFSCNQCPYVTTHRYTRLHITAHHTQRFSCNQCPYVTTHRYTRLHITAHHTQRFSCNQCPYVTTHRQTARLHERWHKGTKYQCPHCPDEFLKFTTYMGHIRIKHPSDFVCQLCGYSFVSEKGIELHKKLKHRLDNDEIPPDGPYCAECGVRFVSVDAHAQHMRVSARHNHTDKEQRESNKPKKGRKSKEAKEREKRAREKNEKDLGESRRVFPSQMRKAEGPIPCEQCGMQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWTHTGEKPFKCNECDKSFRMKQRLVAHRRVHQQVKASYLCNLCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKCFKHASEKRAHITYVHLKKPWPKRSRGKRRVDNRQGPVPTGASEMDVVQPLWAPCDPKLDHINNIIEDKPLYYNLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -