Atae037976.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465265.1:12481577-12485349[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.029 4 9.5 4.2 2 23 156 178 155 178 0.96 2 17 8.9e-05 0.012 17.4 1.6 1 23 187 210 187 210 0.96 3 17 0.008 1.1 11.2 0.5 2 23 222 244 222 244 0.97 4 17 0.0032 0.44 12.5 1.6 1 23 253 276 253 276 0.96 5 17 0.00016 0.022 16.6 3.3 1 23 288 311 288 312 0.96 6 17 0.0001 0.015 17.2 0.5 2 23 337 359 336 359 0.97 7 17 0.0014 0.19 13.6 1.5 2 23 369 391 368 391 0.96 8 17 0.017 2.4 10.2 1.4 2 19 396 413 395 415 0.93 9 17 0.0028 0.39 12.7 0.9 2 21 421 440 420 443 0.94 10 17 0.11 15 7.7 2.0 3 23 453 474 452 474 0.96 11 17 0.0086 1.2 11.1 5.0 1 23 479 502 479 502 0.92 12 17 0.001 0.14 14.1 1.2 2 23 514 536 513 536 0.96 13 17 0.0003 0.042 15.7 1.1 1 23 556 579 556 579 0.91 14 17 0.32 44 6.2 4.1 2 23 586 607 585 607 0.92 15 17 0.18 24 7.0 2.7 2 23 614 635 613 635 0.96 16 17 0.0043 0.6 12.1 0.3 1 23 701 723 701 723 0.97 17 17 0.19 27 6.9 2.0 1 23 729 752 729 752 0.96
Sequence Information
- Coding Sequence
- ATGGACACAAAACCAGAATTAGACATCAAGGTTAAAATTGAGCCTTACACTGAACGTAAAGACCCAACATCTTTCCTGCCAAAAGAGGAAATGAGttacgaaataaaaaagaagaagaagaaaaaaaagaagaagaagaagcaagaAGATGACCCGTTTAAAGATATAGAAGAGAAGGTGTTGGTTACGGAAAGAGTTTTGATGCCGGATTGTGAATCAGACTGTGCTTTGGATCCTGAGGTTACTATTAAAGTTGAGAATATTGAAGTAGAGTTGGATTTTAATGACTTCACAAGCAATGGAGCTCTATTACTACACCATCAAAGTGAAGACAGCCAAGAACCAGAAGTGAAACTTGAACAAGAAAACAAAGATGCAGTAATACTAACTTTTGAAAGTATAGTTAATGACAGCACTATGTTAGATATAGATAACAATATGAATGTAGGTAACCGTAGCACTCAAACATGCAAAATCTGCCATTTGGTATTCCTATCCAAGAAGACATTAAGAATGCATCAACAAAGAAAGCACAAAATATATAGACGCAATTTTAAACACATATGTGATAAATGTGATATGTCCTATGACCAGAGAAATAGTCTAATGGCTCACATAAGAAGGAAGCATGGTCCTAATTCTGAGGAGGACCATGAGAATAGAGTCTGTGAAATTTGTTTTCTAGTCTTCAAAGGAATGGCGCGACTAAGAATGCACATGCGCAGAAAACATGGAGCGTTTGAAGACTCCTTTAAACATATTTGTGAAGACTGCGGACTTACTTACGATAAATATAGAAGTCTAGTCGTGCATAGGAAGAGGAAGCATACTATTACAAAGATGCCAGCGTCGGATCAGTGGTTTAATTGCCCTTTTTGCCCAAAGATATTTAATAAAAGAGAAACTTATGCCAGGCATATGCAGAGAAAACATCACGGGAAAGGTGACGCTGCTGGTAAAAATGCTGAGGAATTCTTCGCGAGTTTTAAAAACGAAGTCGGAGAAATTACTTGCAAAGAGTGCCCCCTAGTCTTTTCTTCTATAAATTCCTTAAAACTACACCTGAGAAGAAAACATAATGTATTGAAAGAGGAGTATGGACTTAAATGTCGCTTATGTAATTTGTCCTACGACAAAATCGAGAGTTTGAAGCGACACATCAGAAGGAAGCATGATGAAGGATCGTATTGCAATGTATGCAATAAACAATTTAGTACTCGGGAGTTGTACTTAAGTCATTCTCATGCGAAAAAGGCAAAGGAATGTTCTTTTTGCGGACTGATTTTCGCAAATCAAGGAGGGCTAGCGAAGCATTTGCGGTGTACGCACAAAATTGAAACTCCTAAAGTAGCATTTTGCAATATTTGTAATGAAGGTTTTCATGATAAACGGCGAGTGAAGTCTCATTTACTTAGAGTACATTATAATGTCACTTATAATTGCAGTTACtgtaataaagaatttaaaagtaaagaaaGTCACAAACGgcacattatttttaaacacaCAAGCAAAGATTCCACTCCTGATAAAATGCAGCGATGTGAACAATGCAAAGAGACGTTTGCTGATGAAATTGAGTTGTGTAAACATGTGAACATGAATCATCGAAGTAATTCCGAAAAAAACATAGTAAAACTTGAAAAAGATGAGAATGAAAACCAATTTCTATGTACCAAGTGTTCAGAGAGTTATACCACTTGGGAACAGTTACGTACTCACTATGAGCAAAATCACTACAAATTTAAAAAGACTCAATGCCAAGTTTGTGGTGAAATGTGCAAAGATAATGAACTGCAGAAGCATATGAAACATTTGCATGTTGAAAGTGAGGAATTGAAGTGTAGATTTTGTGATTATAAAACGAGTGTAAAAAATAGTATGACACAGCATACCCTGCGTCATAAGAATGCAACTACGTTGCATTGTGACTATCCAAACTGTCGctataaaacttattatatcaGTGCCATGGATAAACATAAGCGTAAACATTTAAATCAAGGAGTTAAGTTACAATGCTCGCAGTGCACGTTCCAATCgatgaataaatacattttaaaatatcacGAAGAAGCTCATGCTACAGGTAAAAAACGTTATAAATGCAACCAGTGTGATTATGCAACTATTCTACCAGCTAACTTAGTCcaacataaatataaacattcAACAGAAAAAAGATTTAAATGTGAAGTTTGTCCATTTGCAACGAAATATAATACTTCTCTGCGATTTCATGTTAAAAAGAAACACTGTGATCTCCCGTCTTAA
- Protein Sequence
- MDTKPELDIKVKIEPYTERKDPTSFLPKEEMSYEIKKKKKKKKKKKKQEDDPFKDIEEKVLVTERVLMPDCESDCALDPEVTIKVENIEVELDFNDFTSNGALLLHHQSEDSQEPEVKLEQENKDAVILTFESIVNDSTMLDIDNNMNVGNRSTQTCKICHLVFLSKKTLRMHQQRKHKIYRRNFKHICDKCDMSYDQRNSLMAHIRRKHGPNSEEDHENRVCEICFLVFKGMARLRMHMRRKHGAFEDSFKHICEDCGLTYDKYRSLVVHRKRKHTITKMPASDQWFNCPFCPKIFNKRETYARHMQRKHHGKGDAAGKNAEEFFASFKNEVGEITCKECPLVFSSINSLKLHLRRKHNVLKEEYGLKCRLCNLSYDKIESLKRHIRRKHDEGSYCNVCNKQFSTRELYLSHSHAKKAKECSFCGLIFANQGGLAKHLRCTHKIETPKVAFCNICNEGFHDKRRVKSHLLRVHYNVTYNCSYCNKEFKSKESHKRHIIFKHTSKDSTPDKMQRCEQCKETFADEIELCKHVNMNHRSNSEKNIVKLEKDENENQFLCTKCSESYTTWEQLRTHYEQNHYKFKKTQCQVCGEMCKDNELQKHMKHLHVESEELKCRFCDYKTSVKNSMTQHTLRHKNATTLHCDYPNCRYKTYYISAMDKHKRKHLNQGVKLQCSQCTFQSMNKYILKYHEEAHATGKKRYKCNQCDYATILPANLVQHKYKHSTEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -