Atae025250.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465254.1:4070315-4080287[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2.8 3.9e+02 3.2 0.1 2 23 124 145 123 145 0.95 2 19 0.015 2.1 10.4 0.1 1 23 148 171 148 171 0.98 3 19 8.5 1.2e+03 1.7 4.7 1 23 174 197 174 197 0.95 4 19 0.014 1.9 10.5 0.1 1 20 429 448 429 450 0.96 5 19 0.32 45 6.2 0.5 3 23 461 481 460 481 0.93 6 19 9.7 1.3e+03 1.5 4.1 1 23 497 519 497 519 0.93 7 19 0.073 10 8.2 1.5 5 23 531 550 528 550 0.88 8 19 0.13 17 7.5 0.5 1 23 559 582 559 582 0.96 9 19 0.39 54 5.9 0.1 3 20 631 648 630 652 0.80 10 19 5.6 7.8e+02 2.3 1.0 1 20 657 676 657 680 0.67 11 19 4.5e-05 0.0063 18.3 1.8 1 23 686 708 686 708 0.95 12 19 1.4e-05 0.002 19.9 1.1 1 23 715 737 715 737 0.98 13 19 0.00014 0.019 16.8 1.7 1 23 742 764 742 764 0.96 14 19 0.00013 0.018 16.9 2.2 1 23 770 792 770 792 0.99 15 19 1.7e-06 0.00024 22.8 1.3 1 23 798 820 798 820 0.98 16 19 0.00019 0.026 16.4 3.2 2 23 827 848 827 848 0.98 17 19 7.2e-05 0.01 17.7 1.1 1 23 856 879 856 879 0.98 18 19 9.6e-05 0.013 17.3 0.1 1 23 884 908 884 908 0.98 19 19 0.023 3.2 9.8 3.7 1 23 914 937 914 937 0.98
Sequence Information
- Coding Sequence
- ATGGCATCTGAAGAATCAGACGATGAACCTCTGGCTGTGTTGGCCGCTGCTAAGTTGCAAAATCCTGACAAATTTAGCAAGGAAATCGTAATTGAAAGCAGTGTGGACTATCAACAGCATCAACCaaaagcaaaaaagaaaaagacggCAAAACGCGAGGCTGTGTCTCAACAGGCTTCAATTAGTATTAGTTTAGCACGTAAGGAGAGTAACCACGTCCCTCGACCGGTTATTCAACGCCCTGAGGATGTCTGGTTGTATTTGAAGGACTTCAATCAAGTTGGCCCTTACAGCTGTTTACTTTGCACTGATTGGTTCTTAAGCAGGGGAAAAGTTGTTGTACACTACATATTGAACCATAAAAAAGATTACTGTGGGATATGCAGatATTTTGTTAAAGACGGAGCTTCATGGCAGGAGCATCTCAAATTTCATACACCTTACCCTTGTTCTCAGTGCGTTGAGACATTTCTCACAGAGGAAGAATTAAAACTGCATCTCAACACCATTCACAACCTTTTTCACTGCCGTCTATGTCACTTCAGAGTATCGGATGACACTCAGTACAATGTACACTTGATGCAAAAGCACAATATCACTAACTGTGCAGTTAAAGACAATGAAGTCCTATGGGAACTAGAGTCTGCAGGAATGCCAAAGTTTATATGCCTATTATGTTCGAGATCTAACAACTTACACTCCACATTTGTACAACATTACATGGGCTACCACCATTTCACTTTGAAATGTTTTGCGAACTTGATTTCAGGGAAAAATTTCCCTTTCAGTGTGTTTGGAATTAACCTTAGTGCAAATTTTCTTGAGTCCCTGAACAACCATGGAAAATTGGGCTATGTAGACCTTGATCAAAAGAATATAAATATACAAGAAACAGAACAAAGTATTGCTGAAAATGAAGCTCTAAGAGAACTTTTGTTGGATGTAAAATTAGAAGCTCTAAGTGACAATGAAGATCCTGATGAAAATGAAGGTGAAAGCAACGGAACCAATGATTCCTCTCAGGTCAAGTCTTATAGAGGACAACAAGATTTTGATATTACTTTGATGGAGTTAGTCACCCTAGAGAAATGCTTTTTTCATTATCTAAATCAAACTCTTACAGATATTAATGCCAAAATTGTACCTCCAAACTCAGGAATAACTTATGCAAAGTCAGATTACAGAAAAACGCAAGTCATGTGTTCTTTATGTAAGAACCAACATAGGCTGAAAGATTTCACTTTGCACATGCTCAGAGCTCATTGTGTAAAAGCTAAATCAATTTACTATTGCCGAGTATGTGCAACTCCTTTTGATACTCGAAGTGAATTGGACAACCACATGTATGAGGAAATGGGTGATTTTGAGGACCTATGGCTGTGTCAGTTTTGTGACAAAGAATTTGATAATAGATTAGCTACAAGGGCTCATCTAACTGATCATTGGGATGCGATAGAACCGGATAATTGCTTCAGCCCACATTTAGGGTTCAAATGCAAATATTGCCCGATACTATTCTGGAACGAAACTGACAGAGAGAGTCATCACCACACACACATTGACAAGCATAAAGAGGAGTTTTACAAATGTGAATGTGGTAAAATCTTTAGTGATAAGATCTGGTTTAACCACCATTACTTTGAAAATCATTACAAAGAAGACCAGCACTTTATGTTCAAATGTAGTTTGTGCACATTAGTTCTGTCATCTGTGGATGAGATGCGGACACATTTCAATTCAGAGCACCCCGAGGCAAAGAAACTGTTCTGTTGTCTTGACACATGCAAATTTAGACCTCTCAGTCACCAGAAGTCCTTCAAGATGCATTTGAGGTCGCTACATGCGATGACGGGCAGCAAGATAGGCCGAGACAATATGAACCCAAGTTTGTGCACTATCTGCGGCCGACAGTTCCCCTCCCCGCGAGCGAGGGGAATACACGTCACACAAGTGCATGGATCGGCCAAGTTCAAGTGCAAGATATGTGATCAATACATGCATTCTATGGATGAGAGAAAACTCCACTATCTAATCGCGCACCCCGGCCGCCATCCGTTCGAGTGCTCAGAATGCGGCAAGTCGTTCCAATACAAGTCCTCTCTCTACACGCACAAGTTAGATCATTCGCCTAACAAACAGGACTTCACTTGCGGGTACTGCCAGAAAGTTTTTgctAAAAAAGACTCGTTCCGCGAGCACCTCCAAATCCACGAAGGGCCGCGACACGCCTGTTCATACTGCCCGGCCCGGTTCGTCCAGCGATCCAATATGTTACGTCACGAGAGGCGGCACACTGGAGAGCGTCCGTACACTTGCCCGCACTGCGAGCGTACCTTCGCTGATAAGGGCGCTTGTACTGCTCATGTTAGAACCCACACTAGAGAAGCTTCGTACGCGTGTCTATACTGCGGGCAAACATTCGCACAGAAGTCAAAGCTTACGTATCACATCCGCAAGCACACGGGCGAAAACCTCGAGACTTGCAGCGTCTGTTCCAAAATGTTCACGAGCCTTTGTTCTCTGAGGGAACATATGAAGATTCACACCCGGCAGAGTGAAGTTACCTATAAATGCCCGCTCTGTGAGAAAACGTATCGTGACGAGCGCTACATGCTCCGCCATGTCCGCTCCTCGCATACAAACAGTAACTTCGAGTGCCCTTTGCCGGGATGCCGCAAGCCCTTCACCAACGCCGTGAGCCTACGCTACCACGTCATGACGCACTCGCGACTCAACATGTTCAGATGCAAATTCTGCCCGAAGTCCAGTGCAGTGAAACGCACGATGGTTCATCACTTGCGGCGCCGCCACGGGCTTGGCAACGAAATCAACGTAAAAGACTTCTACACCCGTCTCGACCCAAGAGAAGCTAACATAGACCTCGACGAAGAAACCATGACCAGCATATTTGGACCCCCCAAGAGAAAAGTCCATGACATTCTCATTAGTGACTTTGTCACCTATAAAGACAACGTTAATACTAGTAAAACAGCTACACAAGAAAGTAGTGATGATAGTGAAGCAGAAAATGATAAAAGTGAAGAAAGTGATCAGGATCAAGACGATCAGGATCACATCGCAAAGACAACTTTTGTGAATATTAAAGTCGAACCTAATGATGATGGCAGTCCTAAGAATGATGGGCAGGAATTAGAACCAACTGACTTTGTTAGTGTTAAAATTGAACCTATGGACGAAGACGATTAA
- Protein Sequence
- MASEESDDEPLAVLAAAKLQNPDKFSKEIVIESSVDYQQHQPKAKKKKTAKREAVSQQASISISLARKESNHVPRPVIQRPEDVWLYLKDFNQVGPYSCLLCTDWFLSRGKVVVHYILNHKKDYCGICRYFVKDGASWQEHLKFHTPYPCSQCVETFLTEEELKLHLNTIHNLFHCRLCHFRVSDDTQYNVHLMQKHNITNCAVKDNEVLWELESAGMPKFICLLCSRSNNLHSTFVQHYMGYHHFTLKCFANLISGKNFPFSVFGINLSANFLESLNNHGKLGYVDLDQKNINIQETEQSIAENEALRELLLDVKLEALSDNEDPDENEGESNGTNDSSQVKSYRGQQDFDITLMELVTLEKCFFHYLNQTLTDINAKIVPPNSGITYAKSDYRKTQVMCSLCKNQHRLKDFTLHMLRAHCVKAKSIYYCRVCATPFDTRSELDNHMYEEMGDFEDLWLCQFCDKEFDNRLATRAHLTDHWDAIEPDNCFSPHLGFKCKYCPILFWNETDRESHHHTHIDKHKEEFYKCECGKIFSDKIWFNHHYFENHYKEDQHFMFKCSLCTLVLSSVDEMRTHFNSEHPEAKKLFCCLDTCKFRPLSHQKSFKMHLRSLHAMTGSKIGRDNMNPSLCTICGRQFPSPRARGIHVTQVHGSAKFKCKICDQYMHSMDERKLHYLIAHPGRHPFECSECGKSFQYKSSLYTHKLDHSPNKQDFTCGYCQKVFAKKDSFREHLQIHEGPRHACSYCPARFVQRSNMLRHERRHTGERPYTCPHCERTFADKGACTAHVRTHTREASYACLYCGQTFAQKSKLTYHIRKHTGENLETCSVCSKMFTSLCSLREHMKIHTRQSEVTYKCPLCEKTYRDERYMLRHVRSSHTNSNFECPLPGCRKPFTNAVSLRYHVMTHSRLNMFRCKFCPKSSAVKRTMVHHLRRRHGLGNEINVKDFYTRLDPREANIDLDEETMTSIFGPPKRKVHDILISDFVTYKDNVNTSKTATQESSDDSEAENDKSEESDQDQDDQDHIAKTTFVNIKVEPNDDGSPKNDGQELEPTDFVSVKIEPMDEDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -