Basic Information

Insect: Aproaerema taeniolella
Gene Symbol: -
Assembly: GCA_949987775.1
Location: OX465260.1:2315651-2322219[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.021 2.9 9.9 3.0 1 23 294 316 294 316 0.96

2 12 0.00014 0.019 16.8 1.4 2 23 324 345 323 345 0.95

3 12 0.078 11 8.1 1.5 1 23 349 371 349 371 0.97

4 12 0.00041 0.057 15.3 0.9 1 23 376 399 376 399 0.98

5 12 0.00054 0.075 14.9 0.2 1 23 403 426 403 426 0.94

6 12 0.01 1.4 10.9 0.4 2 21 442 461 442 466 0.92

7 12 0.019 2.6 10.1 1.7 3 23 476 497 476 497 0.98

8 12 0.0054 0.75 11.8 1.0 2 23 517 539 517 539 0.97

9 12 3.7e-05 0.0051 18.6 1.3 1 23 550 572 550 572 0.97

10 12 1.1e-05 0.0016 20.2 1.4 1 23 578 600 578 600 0.99

11 12 0.0019 0.26 13.2 2.3 1 23 606 628 606 628 0.98

12 12 4.9e-05 0.0068 18.2 0.2 1 23 634 657 634 657 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.021	2.9	9.9	3.0	1	23	294	316	294	316	0.96
2	12	0.00014	0.019	16.8	1.4	2	23	324	345	323	345	0.95
3	12	0.078	11	8.1	1.5	1	23	349	371	349	371	0.97
4	12	0.00041	0.057	15.3	0.9	1	23	376	399	376	399	0.98
5	12	0.00054	0.075	14.9	0.2	1	23	403	426	403	426	0.94
6	12	0.01	1.4	10.9	0.4	2	21	442	461	442	466	0.92
7	12	0.019	2.6	10.1	1.7	3	23	476	497	476	497	0.98
8	12	0.0054	0.75	11.8	1.0	2	23	517	539	517	539	0.97
9	12	3.7e-05	0.0051	18.6	1.3	1	23	550	572	550	572	0.97
10	12	1.1e-05	0.0016	20.2	1.4	1	23	578	600	578	600	0.99
11	12	0.0019	0.26	13.2	2.3	1	23	606	628	606	628	0.98
12	12	4.9e-05	0.0068	18.2	0.2	1	23	634	657	634	657	0.98

Sequence Information

Coding Sequence: ATGGAGGACGTAATAGTTTGTAATATTTGTCTGGCCATGGATGTGAAAGTGCAAAATCTGCAGTCCTTTCCTTACAATAATTACTTAGCTGCTGTAGTTGGTGTCACTCCACTCAATACAATTCAAATGGAAAATTATGCCTGCTTTGAATGTGCAAGTCTGCTGAAAAAATTCTATAACTTCCGGGAGCGCTGTCTTATTGGACAATCTGTCTTGTACAGTATTTACAGTACTAATAGAAagATTACATCAGAAGACATTAAACAGCTAAATCGAGTTGAATTAAATCTTGCTTCATCACTGTCATGTTACACTGTTCCTGAAGATACGACAATAAACATCACTTTTGATTATGATGAatcaaaaaatgaaattaaaagagAGCCAAGCGATGATAATAATTACTTTAAGGTGGAGTTTGTAAAGCACGAAGACAGCTGTGATGATGAGTTTCCTATAGGTGATTTATCCAGTGATGACAACGAGCCATTATCTCTGCATAAAATCAACAAACAGAAGAAATCTAAAGataagaaaaaagtaaaaaagagtagaaaaaagaaagaaactaATGAAGTCAAAAAAGAAGAGCAAACTGATGATATAACCGAATTAACTGAATTGGACTCGCAAACTGAGTTCGAATTGCCAATTctttcaacaaaaaagaaaCGTGGTCGTCCAAGAAAGGTAGATACGAAAGATGAAACGCTTTCAATTGAAAAGGAAAAGAAACCACGACGCACACGTAATACTGGCGGTGTTTCTGACGAAGAAATCGATCTTGAGGAATATGTCACTATTATAAAGTTGTCAaTGCAGGAACAAATAgaagaaattaataaacgaCAGCATTCATCTAACTACCAGAATGCTCCTTTTCAATGTAACTTATGTTTTAAGGGATTCATTGATACGCATGCATGGAGGCATCACGTTGGCAAGCACGATCCGAGCTCTGGTGACATAGAATGCCCAGTGTGCAAGTTCCGTTTCAAAACAAAGCGAACTCTACAAAAGCACGCATCGAACCACGAGAAGAAATATGCTTGTAAATCGTGTACTTACGTATCCAAAACAACGACTCAAGCCAAACAGCATCAGCGGTGGCATAAAGGAGTTACTTATAAGTGTCAGTATTGTGACGAAGTGTCGACAAAATGGACGTCATATTTAAGCCACGTCCGCATCAAGCACCCATCCGAATTTATTTGTGGCATTTGCGGTTACTCATTTGTAAGCAAACTTGGTCTTACTATGCACAAAACAATGATGCACAAACATGTAACCGAAAAATTAGAGTCCTCTGAAGACGCAGGCCCATATTGTGAGCTTTGTGATGTCAAATTCATAAATATGGAAGCGTTTAGACGTCACATGGTAACTTCCACAAAACATACCCAGTCCAATGACTTTTCTACTGGGTGTAGAGTTTGTGGAGACACGTTCGATAGCACTGAACAACTAAGGATTCATCATCGTAAAGAACATGCGAGGAAACGTCCTAAAAACTACGGCAAGAAGCCTTCTAATATGACTTGGCCAGCTCAATGTGAACATTGTGACGAAACAATCACTAATGCTCGTGATTATTGGACCCATTTCCGTCGCGCACACCCAGACAAGAGCTATCCGATTCAGAAGAACCATATCTGTGATATTTGTGGAAAGAGTTTTAGGgGTAACGCTTTTCTTGTTTACCACAAGCGGACTCATTTCGAAGAAAGGGCGTACAAATGCGCACAATGCCCCAAGGCGTTCTTCAACAGAACAAACCTTCAGATGCATGAGAAGACGCACTCTGATAACAGGCCGTATCCTTGCAACGTTTGCTACAAGGCTTTTAAATGTAAAGGAGCACTTGATAGACATTATAGAAGCCACACGGGAGTGAAGCCGTACGAGTGCGAGGTGTGCGGCAAAGCGTTCGGGCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTACACCTCAAGCAGCCCGCGCCCTACGTCAGCCGCGCGCGCCAGGAGCGGCGCCGGAACTATGCCATGGACGCTCTGCCGCCGCCGCTGTATGAGCACTAG
Protein Sequence: MEDVIVCNICLAMDVKVQNLQSFPYNNYLAAVVGVTPLNTIQMENYACFECASLLKKFYNFRERCLIGQSVLYSIYSTNRKITSEDIKQLNRVELNLASSLSCYTVPEDTTINITFDYDESKNEIKREPSDDNNYFKVEFVKHEDSCDDEFPIGDLSSDDNEPLSLHKINKQKKSKDKKKVKKSRKKKETNEVKKEEQTDDITELTELDSQTEFELPILSTKKKRGRPRKVDTKDETLSIEKEKKPRRTRNTGGVSDEEIDLEEYVTIIKLSMQEQIEEINKRQHSSNYQNAPFQCNLCFKGFIDTHAWRHHVGKHDPSSGDIECPVCKFRFKTKRTLQKHASNHEKKYACKSCTYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGICGYSFVSKLGLTMHKTMMHKHVTEKLESSEDAGPYCELCDVKFINMEAFRRHMVTSTKHTQSNDFSTGCRVCGDTFDSTEQLRIHHRKEHARKRPKNYGKKPSNMTWPAQCEHCDETITNARDYWTHFRRAHPDKSYPIQKNHICDICGKSFRGNAFLVYHKRTHFEERAYKCAQCPKAFFNRTNLQMHEKTHSDNRPYPCNVCYKAFKCKGALDRHYRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRARQERRRNYAMDALPPPLYEH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -