Basic Information

Insect: Aproaerema taeniolella
Gene Symbol: -
Assembly: GCA_949987775.1
Location: OX465244.1:22517336-22536099[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0036 0.5 12.3 3.4 1 23 241 263 241 263 0.98

2 12 0.19 27 6.9 0.3 2 23 271 293 270 293 0.94

3 12 0.15 20 7.3 3.6 1 23 297 319 297 319 0.97

4 12 0.023 3.1 9.8 1.0 1 23 324 347 324 347 0.92

5 12 0.00052 0.072 15.0 0.1 3 23 353 374 352 374 0.96

6 12 1.7 2.4e+02 3.9 0.1 2 21 384 403 383 404 0.91

7 12 0.74 1e+02 5.1 0.1 2 23 413 434 412 434 0.94

8 12 0.098 14 7.8 1.2 3 23 442 463 440 463 0.89

9 12 3.1e-06 0.00044 22.0 0.7 1 23 480 502 480 502 0.98

10 12 6.8e-05 0.0095 17.8 0.6 1 23 508 530 508 530 0.99

11 12 6.3e-08 8.7e-06 27.3 2.6 1 23 536 558 536 558 0.99

12 12 8.6e-07 0.00012 23.7 1.1 1 23 564 587 564 588 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0036	0.5	12.3	3.4	1	23	241	263	241	263	0.98
2	12	0.19	27	6.9	0.3	2	23	271	293	270	293	0.94
3	12	0.15	20	7.3	3.6	1	23	297	319	297	319	0.97
4	12	0.023	3.1	9.8	1.0	1	23	324	347	324	347	0.92
5	12	0.00052	0.072	15.0	0.1	3	23	353	374	352	374	0.96
6	12	1.7	2.4e+02	3.9	0.1	2	21	384	403	383	404	0.91
7	12	0.74	1e+02	5.1	0.1	2	23	413	434	412	434	0.94
8	12	0.098	14	7.8	1.2	3	23	442	463	440	463	0.89
9	12	3.1e-06	0.00044	22.0	0.7	1	23	480	502	480	502	0.98
10	12	6.8e-05	0.0095	17.8	0.6	1	23	508	530	508	530	0.99
11	12	6.3e-08	8.7e-06	27.3	2.6	1	23	536	558	536	558	0.99
12	12	8.6e-07	0.00012	23.7	1.1	1	23	564	587	564	588	0.97

Sequence Information

Coding Sequence: ATGGAAGAAGTAATGGCCTGCCGTGCATGTCTCGCTACAGACGTGAAATTGtttaatatgtataaatatgagCTCGCCAGTGCTTACGAAGTTCTATCAGGAATTCAGATGTCACCATCAGATGGCTTGCCTCATCAAATGTGCAGTTACTGTGCCGCGTTGTTAACAAAGTGTGTAATTTTTCAGCAGAAGTGTACCAATGCACAGCAACTATTACACTTAGCTATAATGCAGGCACAAACGGTTACAACTGACTACATTCGCTCAATAGATCGGCAAGCTCACAACttgacacatacatacacaatcCAACTGAATCAGACACAAGAACTAgacataaaacataaatttgATTTAGATACAGAACCAATACCAGAATTGTCTGCCTTCATAGACGTTATAAAAGACGAACAAGATTATGAAGGGGAATTCACAGAATTCGGAGAAGAGTTTTGTCAAGAATATAAACTCTTAAATGATAACTCGAGTGATGAAGAACCGCTATCCTTATTCGTGAAGAATCGAGACAAAACACAAGATGAGAACATTGAAGATGAAATAGATGAAGTAAATCTTCAGTTGGAAAATGAAAAAGATGGCggtaatggtaaaaaaaatgtgttgaaaGATTATATGGTGAAAGTTATTATTTTGACCAAAGAAGAGCAAATTCAGGAGATAGAATCTCGGAAAGACTCTCCAAACTACAAGAATTCATTGTACAGGTGTGATCAATGCTATAAAGGATTCATGTTGAAGAAAACTTTCAAAAATCATATGGATAGGCACGATCCGTCCCGCGGCGAAGTATCCTGTGACATCTGTCACATCCGCTGGCCGGACAAACAGAAGCTACAAGCGCACGTACTGTCCACGCATCGCAAGAAGTATATATGCAGGCGCTGCGGACATGTCTCCAGGTCTAGtCACAGCGCTAAGGAACACTATAGGTGGCATCAAGGCGTTACCTACATCTGTGATATATGTGGCGCCACTTTCAAtAAATCTACAAGTCATCTGACTCATGTTCGTCTACAGCATCCGAGCAACAATATATGTGAAACATGCGGAGAGTCGTTTGTAAGCGAAAATGGACTTAAAATACATAAGAATAAGGCTCATAGATACGAGgAATTAGATGTAAATACAAAATGCGCGCTATGCCGAGTTTGGTTTAAAAATACCGAGGCATTGCAGACTCACATCAGCCGCGGGATTTGCGACCCTAACATAAGccCATGTTTGACCTGCGGAGCGAATTTCCTTAACGAAGACTTGTTAAAAGAACACTCGAAACTACACTTAAAAGATGAATCTATGAACTGTTCGCAATGCGGTAGGAAATTCGCGAACGCCCGTTCACACGCATTACATTACCAGAGAGTGCATTTAGGGGTAAAAATGAAGAAACGACCCCGGACCAATGCGGAGGCTGATTTCGTATGCGATGTCTGTGGGAAAATGTGCTCGTCGAACGCAGCTCTAGTGTATCACCAGCGTACACATTCCGGTGAGAAACCGTATCCTTGTAAAGAGTGCCCGAAGAGATTTGGCATCTATCAACGGTTACAGATCCACATGCGGACTCACACGGGCGAGCGTCCTTTCAAATGCCCGCACTGTCCGAAGGCCTTTAAACATAAAGCAGCTTTAAACAGACACGTCCGAGTACACACAGGGGTAAAACCATACGAGTGTCCCAACTGTGGGAAAGCGTTTTCCCAGTCAAACACAATGAAACTTCACGTCAGGACAGTGCATCACAAACTAGCAGCCCCTTATAGAAGACAGAGACAGAAAGACAACTGTACGGAATAA
Protein Sequence: MEEVMACRACLATDVKLFNMYKYELASAYEVLSGIQMSPSDGLPHQMCSYCAALLTKCVIFQQKCTNAQQLLHLAIMQAQTVTTDYIRSIDRQAHNLTHTYTIQLNQTQELDIKHKFDLDTEPIPELSAFIDVIKDEQDYEGEFTEFGEEFCQEYKLLNDNSSDEEPLSLFVKNRDKTQDENIEDEIDEVNLQLENEKDGGNGKKNVLKDYMVKVIILTKEEQIQEIESRKDSPNYKNSLYRCDQCYKGFMLKKTFKNHMDRHDPSRGEVSCDICHIRWPDKQKLQAHVLSTHRKKYICRRCGHVSRSSHSAKEHYRWHQGVTYICDICGATFNKSTSHLTHVRLQHPSNNICETCGESFVSENGLKIHKNKAHRYEELDVNTKCALCRVWFKNTEALQTHISRGICDPNISPCLTCGANFLNEDLLKEHSKLHLKDESMNCSQCGRKFANARSHALHYQRVHLGVKMKKRPRTNAEADFVCDVCGKMCSSNAALVYHQRTHSGEKPYPCKECPKRFGIYQRLQIHMRTHTGERPFKCPHCPKAFKHKAALNRHVRVHTGVKPYECPNCGKAFSQSNTMKLHVRTVHHKLAAPYRRQRQKDNCTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -