Atae018035.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465248.1:3305751-3307429[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00071 0.099 14.6 0.5 3 21 166 184 165 185 0.93 2 10 0.025 3.4 9.7 4.2 2 20 216 234 215 236 0.93 3 10 1.8e-05 0.0025 19.6 0.6 2 23 257 278 256 278 0.97 4 10 0.18 24 7.0 0.1 3 23 283 302 281 302 0.89 5 10 0.00029 0.041 15.8 0.4 2 21 307 326 306 327 0.94 6 10 2.1e-05 0.0029 19.4 0.5 1 23 344 367 344 367 0.96 7 10 0.0041 0.57 12.1 0.2 2 23 375 396 374 396 0.96 8 10 0.00031 0.043 15.7 0.4 1 23 402 424 402 424 0.98 9 10 6.2e-05 0.0086 17.9 0.9 1 23 430 453 430 453 0.98 10 10 5.1e-05 0.0071 18.2 3.6 2 23 459 480 458 480 0.97
Sequence Information
- Coding Sequence
- ATGTTACATAAAAGCGATACGTTTTGTTGCTTATGTCTGAACCCTGCAAACGTCAACCTCATTAACATCAATGATGAGGTTACCTTAGATGATGAGCAGGAAAGTGAAATTAGTTTATCTGAATTATTGGATTTCCTCTTTGGGAAAGAGGTTGCTGATATATACTTGTTATCAAATGCATTGTGCGAATCTTGTGCAAAATCCGCTATTAAATCTTATAAGTTCATAAAACAATGCAAAGATACATCTCAAATGTTAAACAGACTTATCGAAAATTTTACATCATGTGCAAATACCATGGAGAACTTCGAACAAAGTACTGTATACATAGCTCTGGATCCAAAGATCCAATCTACAGTACTTTTCGTGGATGGCAAAATCGTAAAGGACAAAACTGCTGCTTCGAAAAGATTCCTAAGATCAGTTATTAAAGATGACGCCCTTCCAGAAATACTTCCAACATTTGtagattacattaaaaaaaatcatgaaagtTGTGTCAATTGCGCACAGATTTTTACAAGCAAATCTAGCTTGAATAGACATATGACAAAAGGATGTCTTAAAGTTGAGAAAATTGATGATAACTTTGATGAAAACACTTTTGATGATGATACTCCCTTAGTTTCAGAAAGATCATGTTTATATTGTGAGAAATGCGGTACCCGTTGTTGTAATAAATCTATCTTACGGAGGCATATGACATACTCCTGCAAATATAACTTGGTCCGTAAAGAAAAGAAACAACCTGTCAAACGGGAACCATCACAATGTTCAGATTGTGGTGAAACTTTTGCATCTAAACATGCTTTAGGAGTTCATCAGCTAAAACATGAATTCATTATCTGTAGTGAATGTGGTAAAAGTGTACGAGCAAACAGAATACAAATACACGAACGCAGCCACTCAAGGAAACTGAAATGCCCCAGATGTGGAAAAGTATACAAACATATTGGCTCTTTTCAAGAACATATTAAGTACAATCTTGATTGTTATAAAAAGGTTGAAAGGGATCCTGTTCCTAAAAATTTTATATGTGATTTCTGTAGCAAAACTTTTGGCAGGAAAACTTCACTGGTGGTTCACATAAGACTTGTCCATAATGATAGTGAGCCTAAACTGGAATGTATGtggtgtaaaaaaaagtttcttcaACCGAGTGCTTTGAAGGGTCATATTCTAAAACATACTCAGGAAAAGAAATTTGAATGTAACATTTGTGGGGGTAAATATGTAACTAGAGAGTCTCTTTTGTACCACACTCGTCTTCATACAGGAGAAAAGCCGTTCAAATGCAAGTCCTGTGACAAAACCTTTGCTTCTGCATCGAGACGTGCCGACCATATGCGATCTGTACATTTGCCACCATCTTTGGAATGCAAATTATGCTATAAAAAATTCAGACGGCATGGAGCATTGGCTAGACATAGACGGAGGCACTACAATCCTAAGAGCAGCTTATACTATAGTGGCTTAAATGAAAACATGGATAAAAAGAATTAG
- Protein Sequence
- MLHKSDTFCCLCLNPANVNLININDEVTLDDEQESEISLSELLDFLFGKEVADIYLLSNALCESCAKSAIKSYKFIKQCKDTSQMLNRLIENFTSCANTMENFEQSTVYIALDPKIQSTVLFVDGKIVKDKTAASKRFLRSVIKDDALPEILPTFVDYIKKNHESCVNCAQIFTSKSSLNRHMTKGCLKVEKIDDNFDENTFDDDTPLVSERSCLYCEKCGTRCCNKSILRRHMTYSCKYNLVRKEKKQPVKREPSQCSDCGETFASKHALGVHQLKHEFIICSECGKSVRANRIQIHERSHSRKLKCPRCGKVYKHIGSFQEHIKYNLDCYKKVERDPVPKNFICDFCSKTFGRKTSLVVHIRLVHNDSEPKLECMWCKKKFLQPSALKGHILKHTQEKKFECNICGGKYVTRESLLYHTRLHTGEKPFKCKSCDKTFASASRRADHMRSVHLPPSLECKLCYKKFRRHGALARHRRRHYNPKSSLYYSGLNENMDKKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -