Atae044250.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465271.1:4181303-4185137[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0036 0.5 12.3 2.5 1 21 113 133 113 136 0.90 2 21 0.013 1.9 10.5 0.4 2 23 163 185 162 185 0.95 3 21 1.5 2.1e+02 4.0 4.5 2 23 208 229 207 229 0.96 4 21 8.9 1.2e+03 1.7 0.3 1 19 233 251 233 255 0.76 5 21 0.16 22 7.2 2.0 1 23 264 287 264 287 0.97 6 21 4.1 5.7e+02 2.7 1.1 3 23 296 317 296 317 0.96 7 21 1.5e-05 0.0021 19.8 1.0 2 23 325 347 324 347 0.96 8 21 0.011 1.5 10.9 1.7 1 23 353 375 353 375 0.97 9 21 3.6e-05 0.005 18.6 0.6 1 23 381 403 381 403 0.97 10 21 1.6e-05 0.0022 19.8 1.1 1 23 409 432 409 432 0.98 11 21 0.093 13 7.9 5.4 3 23 547 568 546 568 0.91 12 21 0.034 4.7 9.3 3.4 1 23 613 636 613 636 0.92 13 21 0.19 27 6.9 0.4 2 23 663 685 662 685 0.95 14 21 0.061 8.5 8.5 2.0 2 23 708 729 707 729 0.97 15 21 1.4 2e+02 4.2 6.5 1 23 733 756 733 756 0.97 16 21 0.31 42 6.3 0.7 2 23 765 787 764 787 0.93 17 21 0.68 94 5.2 1.3 1 23 792 815 792 815 0.90 18 21 0.00059 0.082 14.8 3.9 2 23 823 845 822 845 0.93 19 21 0.00039 0.055 15.4 1.0 1 23 851 873 851 873 0.97 20 21 8.1e-07 0.00011 23.8 2.2 1 23 879 901 879 901 0.98 21 21 0.00025 0.035 16.0 0.2 1 23 907 931 907 931 0.93
Sequence Information
- Coding Sequence
- ATGGACAAGACTCAAACGCTGTCTGTTCGCGAACTTGAGCACAATCTTCATGATATAACAATTCGTAAATTGGACATTGTACCAATAGAATTCGTTGGACTCGAGCCTTCATCAAAGGGAGAAAAAGTAAATTCAAGTCATTTAGTTACCGTCTCTACTGATACTGAATCCACTCCGTCAAAATCTTTGAACAAGACCGAAAATTCTTTAAGGCGTCGTTTAACAAATTCTGCCTCTAAACGGCAACTTACTGGAATGTTTACTAAACATCGACAGAACGTACAAGAGATTATAATATGCTCCAATGCAACACCGATACACGGCGGCGGACTCAGCTATTCCTGTTGGTTTTGCACACAACAGTTCTCCAACCCGCATGAACTTAAGAAACACAACTTAGATTCCCACGACGACGGTGAAAAACGAACTTACATGAATAGCAAGACTACTTACAGTTTTTCAGCTAAAATTGACATAACGGATCTGACATGTAAACTGTGTGGTGTGAGCATAGACACTCACGAGAATCTGCTCGAACATTTGAAAAATGTACACGAACGCGAAGTTCATTTAGATATTAAAAACCAAATCTTACCTTTCAAATTTGATGACGAAACGTTGACATGTTTTCTTTGTCTGAACGTGTTTCACACTTTCAAAGCCTTGCAATCCCACATGCACTCTCACTTTAGTAattatatttgtaaaatttgttCAGCAGGTTTTGTATGTCAGGCTCTGCTGGGTGCACATGATAAGATACACCAACAAGCCGTTGCAGAGAGATCGTTCCAATGTGAGCACTGTTCTAATGCCTTCCCCTCTGAACAAAGAAAGCAGTCCCACATCAAAAAGGTTCACAAGCCGGAAACAAGGAACATTGGTTGTTCCTTCTGTTTACAAAAGTTTAGCAGTTTCGACGCTAGATCCgtgcatttaaaaaatattcacgGAGTGCAATTCCAAGAGCTCAAATGTAACGCATGTGATAAAAATTTTGCAACGAAAAGTGCTTTAACTAAACATGTCAAGAGAAATCATTTGATGACTCGCCCCCATACATGTGCACTCTGTGAAGCAAAGTTTTTTTCTAGCAGAGAACTTAAGCTACACATGGTTAAACATACTGGTGTGAAGGAATTCGCTTGTGACATTTGCAACAGCAGATTTGCTCGGAATAAATCCTTAAAAGAACATCTACGCATACATTTTAACGATAGACGATTTAAATGCGACCATTGTGACGCAGCGTTTGTCCAAAAAGGCAGTCTTAAAGGGCATTTGCGTTCTAGACATGGAATAGAATTAGTTGAACCTACTGGCATTCCTTGCGAAGGTAGTGGTGGTATCGTGGTAAAACGCGAACAAATAAACAGTAAGTCAGAAATGCATAATCCTTACGATTTTGAAGTCAAGATCGAAAATGACTTTGATTCAGAATCGACGGCATCTGACACTAATATGCTTTATATTCATGAAACTCCCACAATAACGACAGAGAAAAATCCATCTGACGTTATTGTACCAAAGGAACCTATTTCCGTAACGGAAAAGACTGCTGACCATCGAGATAATGTGCTAAAAAGTAAAGCAACCTCCAGTGCGACTCTGCCAAAAAGCGGAGGACTAAACCGTATGTGTTGTTTTTGTACAAAACAATTCTCCGACTCCCAAGAACTCAAGCAACACCACTTAGATTCCCACGAAATGAGCGATAAACGAAACTACATAAATATCAAGTCTGTTGGCAAAATGAACATCATGAAACATCGACAGAATGtgcaagaaataataaaatgctCTAATGCGACCCCAATGAACTGTGTAGGGGTCAGCTACAAATGTTGCTTTTGCACACAACAATTTCCTAACCCACAGGAACTTAAACAGCACAACCTGAATTCCCACGACGATActgaaaaacaaacatacatgaATAGCAAGATTATAAAGAACTTTATTGCGAAAGTCGATATAACAGACCTAACATGTACACTTTGTGGTGTCAAAATAGACGATCACGATAAACTGCTCGAacatctgaaaaatgaacacgAACGCATCGTACACCTAGATATTAAGAACCAAATtttaccttttaaatttaacgACGAAACGTTGAAATGTTTTCTTTGTCTGGAGATATTTCATACTTTCCAAGCCTTACAATCCCACATGAACTCACACTATAGCAATTATGTTTGCAAACGTTGTGGAGCATGTTTTGTATGTCGGTACCTGCTAGATAACCACCATAAGGTACGACACGAAACCCCTGCAGAGCGGTCTCTGCAATGTCAACACTGTTCTGCAGCTTTCCCTACCGAACGCAGAAGAAAGGCTCATGTCAGGGATGTCCACAAGCCTAGGAACTTTAAATGTTCTTTCTGCTTACAAAAGTTCAGTAATTTTGATGCTAGATCCGAGCATTTGACAGAAATTCACGGAGTGCAATTCCAAGAGCTTAAATGTGACGCATGcgataaaacttttaaaagaaaaaatgcgTTGACTAAACATAACTTGAGGTGTCACAAGATGAGTCGCCCCCACGAATGCACGGTCTGTGGTGCGAAGTTTTTCGATACTGGAGAACTTAGGCTGCACATGACTAAACATACTGGTAAAAAGGAGTTCACTTGTGATCTTTGTCAAAAGAGCTTTACACGAAAACAATCTTTGAAAGAACATCTTCGTATTCATTTTGATGATAGACGATTTAAATGCGACCTTTGTGACGCAGCGTTTATCCAAAAAATTGGCCTTAAATGGCATTTGCGTTCTAAACAGCATCGGGATTTGCGAGATGAAATGGCAAGGGAAGAAACTGCTAGCAAAGCTAGAGATTGA
- Protein Sequence
- MDKTQTLSVRELEHNLHDITIRKLDIVPIEFVGLEPSSKGEKVNSSHLVTVSTDTESTPSKSLNKTENSLRRRLTNSASKRQLTGMFTKHRQNVQEIIICSNATPIHGGGLSYSCWFCTQQFSNPHELKKHNLDSHDDGEKRTYMNSKTTYSFSAKIDITDLTCKLCGVSIDTHENLLEHLKNVHEREVHLDIKNQILPFKFDDETLTCFLCLNVFHTFKALQSHMHSHFSNYICKICSAGFVCQALLGAHDKIHQQAVAERSFQCEHCSNAFPSEQRKQSHIKKVHKPETRNIGCSFCLQKFSSFDARSVHLKNIHGVQFQELKCNACDKNFATKSALTKHVKRNHLMTRPHTCALCEAKFFSSRELKLHMVKHTGVKEFACDICNSRFARNKSLKEHLRIHFNDRRFKCDHCDAAFVQKGSLKGHLRSRHGIELVEPTGIPCEGSGGIVVKREQINSKSEMHNPYDFEVKIENDFDSESTASDTNMLYIHETPTITTEKNPSDVIVPKEPISVTEKTADHRDNVLKSKATSSATLPKSGGLNRMCCFCTKQFSDSQELKQHHLDSHEMSDKRNYINIKSVGKMNIMKHRQNVQEIIKCSNATPMNCVGVSYKCCFCTQQFPNPQELKQHNLNSHDDTEKQTYMNSKIIKNFIAKVDITDLTCTLCGVKIDDHDKLLEHLKNEHERIVHLDIKNQILPFKFNDETLKCFLCLEIFHTFQALQSHMNSHYSNYVCKRCGACFVCRYLLDNHHKVRHETPAERSLQCQHCSAAFPTERRRKAHVRDVHKPRNFKCSFCLQKFSNFDARSEHLTEIHGVQFQELKCDACDKTFKRKNALTKHNLRCHKMSRPHECTVCGAKFFDTGELRLHMTKHTGKKEFTCDLCQKSFTRKQSLKEHLRIHFDDRRFKCDLCDAAFIQKIGLKWHLRSKQHRDLRDEMAREETASKARD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -