Atae038035.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465265.1:13950670-13953414[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00011 0.015 17.1 1.9 1 23 173 195 173 195 0.94 2 18 3.2e-05 0.0045 18.8 0.7 1 23 200 223 200 223 0.95 3 18 0.0027 0.38 12.7 0.3 2 23 254 276 253 276 0.91 4 18 0.072 10 8.2 3.2 2 20 280 298 279 300 0.94 5 18 0.0045 0.63 12.0 0.2 1 23 330 353 330 353 0.94 6 18 0.029 4 9.5 2.7 1 23 359 382 359 382 0.93 7 18 0.00038 0.053 15.4 5.3 1 23 413 435 413 435 0.98 8 18 0.0064 0.88 11.6 2.0 2 23 441 463 440 463 0.96 9 18 0.013 1.7 10.6 0.6 1 23 475 497 475 497 0.98 10 18 0.00068 0.094 14.6 2.3 1 23 503 525 503 525 0.97 11 18 0.0099 1.4 11.0 1.3 2 23 532 552 531 552 0.96 12 18 0.0018 0.26 13.2 6.3 1 23 564 586 564 586 0.97 13 18 0.023 3.2 9.8 2.1 2 23 591 611 591 611 0.98 14 18 0.012 1.7 10.7 1.7 2 23 619 641 618 641 0.96 15 18 0.00019 0.026 16.4 1.9 1 23 647 669 647 669 0.98 16 18 0.049 6.8 8.8 1.1 1 23 676 698 676 698 0.97 17 18 0.0026 0.36 12.8 0.9 1 23 704 727 704 727 0.97 18 18 0.0016 0.22 13.4 2.0 2 23 733 755 732 755 0.96
Sequence Information
- Coding Sequence
- ATGgataattttgatacaaaaCCAGCGACGACAAAAACATGGAAAGAAAACATTCAGAAACTGCTAATAAACAATGAATCCTGTGGAATTTGCTTAGAAGAACACGATGAAATATATTATCTAGATGCtatcttttatataaaaaacatgGAAACGGAAAGAAGGTTACAGGATAtcattgattttgtttttgggAATTCCCTAAAAGATTACCTGCCATCGAAGAAAATCTGTGAAACCTGTACAGATGTGATACTCCAATCTTACTTCTTGGtgaagaaaattaaaacaaatcacTTTTATCTTGATAAGTATTTCAGTGCAATTTCTCAAAATGTAAGTCTTCCAGTAAAGTCAGATGATAAACCACTTATGTTGACTATTGATAACATTAACCAACTCAAAGTACCCTCAACGGttacaaaatcaaaaacaaaagaaataatgCAAATCATCGTATCAGAAGTCAATGAAGAATTTGATGTTGATGTCAGATATGATAGAAACATGTATAGATATGAATGCTCTTATTGTGGAAAAAAGTTTGATACTTACGACTCATTTAAGATGCATTTCGCTTTACACAAAGACACTTACTACCGTTGTCCTAAATGCGGAAAAAGAGTCAAGTCATTCAAAGAATTGATAAAACATAGGAATGCTGTCCATCAAGAAGAACTTAGAACGTGTGATATCTGTAGAATAATTTTACTAAGTAAATTTAGTATCGAACATGAAAGAGAACACAAAGTTGATCTAATCTGTCATCTTTGTCAGATTGTTTTTTCGGATAAAAATGCGTTAGACAATCATATCGTTCAAAATCATAGCTATGTCAAGTGTAACCGATGCTTTAAGACATTCAATAATGAACTTAAACTGAAACAGCATAGATGTGCTTTTAAATGCTCAGAGTGTAGTGATGAATGCAAACATGAATATTATTTGAATTCGTACAGAGAACAACGTTTACGGAACCAACTTCTCTATAAATGTCCAGATTGTGACTTCAAATATACTGTGAAAAACGAAATAATATCTCATGCTAACTTAGAACATTTGAAGAATTTGCCGTTTTTGTGTCATTTGTGTGGAGAGAATTTCCCATCACGTCCACTGCTGTCATATCATCACACGAAAATGCACTCTGAAACTTCTAATGGTTCTAATCCTGAAGATTTAAAGGCACAAGTAAAGAGCTCCGATAAAGAACCTTCATCACAAGTAACCTCATCGTTCAAATGCAACACATGTGGCCATCATTTTGAAAGTCAAAAAGCTTTAAAAGTACATGAAAAAAGACATCTGACAAACGAAACTCAGTGCCAATACTGCGGATCTTGTTTCTTTAATGTTGGGCTATTAAACACACATTTAGAAAAATACCATCcaaatgaattgaattgtaaTCAAATCGCTGTTTACCGCTGTACCATGTGTCCGTTGGACTTCAATTTCagaaatgattttgttgaacatgTTTCTTCGCACCCCACAGGATCGAAACATGTTTGTAGAGAATGTAACGCAACATTTTCAGTAAAGCAACAGTACTTATCTCACATTAGAAAGCACAGGATTAAATATGACAAGGAATGTCCAATTTGCTTCAAGAAATATACGAAAAATACCATTCAGAGGCATATGGCGAAACATGCAGAGAGAAATGAATGTGATAATCCTGGCATCCATAAATGCCAACTCTGCGGAGAGACTTTTACTCACAAAATGTCTTTCATTAAACATTCAAAACAGCATGGAGAAAAAGAACAATGTCCGCATTGTAACAAAGAAGTTAACAGTGTCCTAATGAAGCAGCATTTGAAAACTCATGCTTCTACAAACAACGTTAAATCTTGCTCAGAATGTGACTACACAACCCGTTTTCCAAATTGCTTAGAAGCACATGTCAACCGGTATCACTTGAAGATCCGTCCATATCAATGTTCTGTATGCAGTAAATCATTCTATTCCGTTTACACATTAAAAGACCATAAGGTAACGCATAAGAAGAAACGACCAGCTCATTACTGTGACATGTGTGGTGATAAATTTATAAGCAAAAAAGCTGTGGTTCTTCATAGACGATTGCACACAGGTGAGACCCCTTATCCCTGTAATTTGTGCGATATGAGGTTCATATCGGGCAGCAGACTACATGAACATATGATCAGAAGACATTTTGAGCCAAGCGTACCATGCCAGCTTTGTGACAAAAAACTATTCACTAGATGTGACCTGAAAAGACACATAAAAAGTGCTCATGGTGAACTTAAAAAGATAAATAGCACTGAAAATATTGAAACAGAATTGATTGAACAACAAGTTGAGGAAGATGAAATTATATCATGA
- Protein Sequence
- MDNFDTKPATTKTWKENIQKLLINNESCGICLEEHDEIYYLDAIFYIKNMETERRLQDIIDFVFGNSLKDYLPSKKICETCTDVILQSYFLVKKIKTNHFYLDKYFSAISQNVSLPVKSDDKPLMLTIDNINQLKVPSTVTKSKTKEIMQIIVSEVNEEFDVDVRYDRNMYRYECSYCGKKFDTYDSFKMHFALHKDTYYRCPKCGKRVKSFKELIKHRNAVHQEELRTCDICRIILLSKFSIEHEREHKVDLICHLCQIVFSDKNALDNHIVQNHSYVKCNRCFKTFNNELKLKQHRCAFKCSECSDECKHEYYLNSYREQRLRNQLLYKCPDCDFKYTVKNEIISHANLEHLKNLPFLCHLCGENFPSRPLLSYHHTKMHSETSNGSNPEDLKAQVKSSDKEPSSQVTSSFKCNTCGHHFESQKALKVHEKRHLTNETQCQYCGSCFFNVGLLNTHLEKYHPNELNCNQIAVYRCTMCPLDFNFRNDFVEHVSSHPTGSKHVCRECNATFSVKQQYLSHIRKHRIKYDKECPICFKKYTKNTIQRHMAKHAERNECDNPGIHKCQLCGETFTHKMSFIKHSKQHGEKEQCPHCNKEVNSVLMKQHLKTHASTNNVKSCSECDYTTRFPNCLEAHVNRYHLKIRPYQCSVCSKSFYSVYTLKDHKVTHKKKRPAHYCDMCGDKFISKKAVVLHRRLHTGETPYPCNLCDMRFISGSRLHEHMIRRHFEPSVPCQLCDKKLFTRCDLKRHIKSAHGELKKINSTENIETELIEQQVEEDEIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -