Atae038304.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465266.1:1766116-1767825[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.9 5.4e+02 2.8 0.3 11 23 128 142 128 142 0.85 2 11 0.67 93 5.2 2.1 2 23 252 274 249 274 0.87 3 11 0.0048 0.67 11.9 0.8 1 23 280 302 280 302 0.98 4 11 2.1e-05 0.0029 19.4 1.1 1 23 308 331 308 331 0.97 5 11 0.0092 1.3 11.1 0.0 2 20 338 356 337 358 0.94 6 11 1.9e-07 2.6e-05 25.8 1.6 2 23 377 398 376 398 0.96 7 11 2.3e-06 0.00032 22.4 3.3 1 23 405 427 405 427 0.98 8 11 8.7e-05 0.012 17.4 0.3 1 23 433 455 433 455 0.97 9 11 7.5e-06 0.001 20.8 2.1 1 23 461 483 461 483 0.96 10 11 7.6e-05 0.011 17.6 2.9 1 23 489 511 489 511 0.96 11 11 0.00012 0.017 17.0 3.5 1 23 517 540 517 540 0.98
Sequence Information
- Coding Sequence
- ATGAGTGATCCAGAAGAGACTTACTGTAGACTCTGTGCTGAACCAACAGAGAAGGAGCAGCTAATATCAGCTGATGAAGATGTAGCTATTACTTCGAAAATTGCTATGAAAATGCTTTGGATAAATGTGGATATTTCAACGTCAAGCAGTCTTCCAAGCACAATTTGCTTCTCATGTTTCGACTTATTAGAACGTACTTGGTCTTTTCTGCATAATGTCCGGAGCGCGCAAGAGAAACTAACCCAAATATTTGTCAAAAATTCGAAAGAAAGTTCATGCGTTTCTGCCGACACTATCAAGCCAGAAAATGCAGGGAAACCTATCGACAAAGATTGGCAAGAATTCCAGGACACGAAAACTGAGGTCAAAGATGACCCTGAGACTACTCTTAGCAATTTAGAAGTACATACACGTACTTACACTCACGCATTTAATCCCTACCGTGGTAGGCAGaccatcagtggttccagaaccagaAATTTAGAAGTTATAGGAACTGTTGATCCTAGTACGTTGATCGATGGAGACCTGGGAATAAAAATGGAGCGGGATAGCGATGACTACCAAGGTAACGATACAGATTATAACACCACCGACAGTGACCTACCACTTTTAAAAACGAAACAGtctaaattaaagaaaaaaaaacaatttgacaTTGAAGTTACTGTTGAAGACTTGCTTAGAAGCGAAGTTGACGCAGAACCGTTAGATATTTCATCCTTAAACATGACTTGGGATGACTACATGTGCCGTTGTGCGACTTGTGATGCGATGTGTAAAAATATTACGTCGTTGCAGCTTCATGCAACGCAAATACATTCGCGCTGCTGCGTTTTTAAATGCTCAGACTGCGGTAGAGTAATGGGTAACTTCAAAACTTTTGTAAACCACGTACGATCTCATAAAAAATTGCTTCGCTACGTTTGTGAATactgtaataaacagtttactCTAACagcgtacttaaaaaaacacttaaactcTGTTCATAGTGACGCTAGCCTGATGACTTGTCAAAATTGTGGAACGTACTTCGAAACGGAAGAGttactgcaagatcatttgattTTGTACTCTAAAGAAGGTAGAAGAGCGAGAAAGAAGGATGCGTATGAGTATGATTTGAAATGCAAGGACTGtggtaaggaatttaagtctaGAAGCAACTTACAGCAGCATAAATTAGTCCATACTCAACGTAGTCGAGATTTTTCATGTCATGTGTGTGGTAAAATGTTCTTTACTAAAGGTACGTTAAGCACTCATATGAGTACGCATGAAGATCTTAAGCCTTTCAAATGTGAGTTCTGTCCGATGGCTTTTCGGGCTCGAGGTAACCTCCAATCACATATTAGTCTTCATTCCGGTGCAAAACCGTTTGTCTGCGAACAGTGTGGTAAATCTTTCAGAGTCAAACGACATCTTAAATCACATTCTATAGTCCACACCGATTTAATGCCTTATCTCTGTCAATATTGTAATAAACCGTTTAGATTTAAGACTAGATTGAACCTACATATGCGACAGCATACAGGTGCTAAACCGTACACTTGTGTTTTCTGTCAAAGAGATTTCACAAACGGTTCAAATTATAAGAAACATATGAAGAGACGTCACAATATAGATACATCAAAGAAAAGATACAATAATATTGTTGTTGACGGTGCAAGCGATGTAAATAGTGGAGAAcggaatggaagtgtttaa
- Protein Sequence
- MSDPEETYCRLCAEPTEKEQLISADEDVAITSKIAMKMLWINVDISTSSSLPSTICFSCFDLLERTWSFLHNVRSAQEKLTQIFVKNSKESSCVSADTIKPENAGKPIDKDWQEFQDTKTEVKDDPETTLSNLEVHTRTYTHAFNPYRGRQTISGSRTRNLEVIGTVDPSTLIDGDLGIKMERDSDDYQGNDTDYNTTDSDLPLLKTKQSKLKKKKQFDIEVTVEDLLRSEVDAEPLDISSLNMTWDDYMCRCATCDAMCKNITSLQLHATQIHSRCCVFKCSDCGRVMGNFKTFVNHVRSHKKLLRYVCEYCNKQFTLTAYLKKHLNSVHSDASLMTCQNCGTYFETEELLQDHLILYSKEGRRARKKDAYEYDLKCKDCGKEFKSRSNLQQHKLVHTQRSRDFSCHVCGKMFFTKGTLSTHMSTHEDLKPFKCEFCPMAFRARGNLQSHISLHSGAKPFVCEQCGKSFRVKRHLKSHSIVHTDLMPYLCQYCNKPFRFKTRLNLHMRQHTGAKPYTCVFCQRDFTNGSNYKKHMKRRHNIDTSKKRYNNIVVDGASDVNSGERNGSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -