Atae045343.2
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465272.1:8781712-8795478[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.34 48 6.1 1.9 3 23 172 195 170 195 0.90 2 13 0.0003 0.042 15.7 1.7 3 23 232 253 230 253 0.95 3 13 5.8e-05 0.0081 18.0 1.5 2 23 258 280 257 280 0.96 4 13 5.4e-06 0.00076 21.2 0.1 1 23 288 310 288 310 0.98 5 13 0.00046 0.064 15.1 1.9 1 23 316 338 316 338 0.98 6 13 4.6e-06 0.00063 21.5 0.4 1 23 345 368 345 368 0.98 7 13 0.0012 0.16 13.9 1.2 1 23 374 396 374 396 0.97 8 13 0.00049 0.069 15.0 0.2 2 23 417 438 417 438 0.98 9 13 0.00047 0.065 15.1 1.7 1 23 445 467 445 467 0.97 10 13 0.0078 1.1 11.3 0.3 1 23 473 496 473 496 0.96 11 13 4.7 6.5e+02 2.5 1.8 2 23 505 523 504 523 0.83 12 13 0.0028 0.39 12.7 0.1 1 23 528 551 528 551 0.93 13 13 6.3e-06 0.00087 21.0 0.9 2 23 558 580 558 580 0.97
Sequence Information
- Coding Sequence
- ATGCCTGAAATTTGGAACTTAAGTGCTCTGTGCCGTTGTTGTCATGCCGACGGCAAATTTAAGAATCTTGGATTCGCCTATGTTACCGAAAATGGTGTTGAAATGTACGGTGCGATGTTTCAAGAAACATTCAATATTAAGCTTAATCCCCCACCCATAGACGCCAGTTACGCTATATGCGATGAGTGCATTTCTAAACTGAGGGACGGATACCGGTTCAAGCTTCAAGTGCTCGATTGCGAGCAGAAATTCCGTACGTACTGTCAGAATGAAGTTGCCCTTACTTCTGTCAAGATTGAACATGAATCTGACACTGAGAGTGCACTTGAAGAGAAACCGGTAGATGTCATCAACTTTAATGAAACTGTGATCaaaaatgatgatgatgatgatgataatctTTACAACGATGATCACCATTACAGTGACGGTAATGATAACTGTATAGATGATGAACCGAAAAATATAGAAGAACATCAAGCGCTGccaaaaatagaaaacaaacaGTACGGCTGTAATTATAAAGGATGTATAAAGTCTTTCGCCGCGCTAAAGTCTTTGAGGAGACACAGAAGATTATGCCATTCTGATGTTTCCGTCAGTGAAGTAGgccTTAAAGAGATAAACGACTTAATGCGGTCAACGTCACCACTatcagaaataataaaaaccgaATCGGGGGACCTTATTGCATGCAAAACTTGCGGACACACGTTTCAAAGTAACGAACAACTTACCACGCACCTGACGAAAGAACATGGAGGCGTCTTAAAATGCCCGACGTGCAAAAActtctacaaaaacaaatacaattTGCGCGCGCACATATTGAAAATGCATTTAAAGTGTAATAACCAATCTTTTAAATGTGAATATTGCGAAAAGGTTTATCCTAACAAAGCCGCGTTGAAAGCCCACGAAAATATACACACTAGGAAGAGAATATACATTTGCGATATTTGTAATAAGGAGACTGTTCATAGGACTTCTTttataaatcatttaaaatctCACTATGGTACCTTGAAAAGGTATTATTGCGATCAGTGTGGCCGAGGTTGCAATGACGCGTCTAATTTAAGAATTCACATTGAAACTGTTCATGAGAAAttaaaaagatttgattgtcaTCTGTGCGGAGCAAAATTCGCCTTACGAAGGGGTTTAAAATCGCATTTATTGAGACACGAAGGCAAATTTCCAGGACAAAGTAAATTCTTTGTCAAAAATGGCGTTCGTTACGAGAGGAAATGTCCAGTTTGCCCAGAGACTTTCGCGGACAGGTTGAAATACAGATATCATATGAGTATTCATAAATCTGATTGCAGAAAGTACAAATGCGATTTCTGTAACAGCCAGTTTGGTACTAGGTACTCGTTAAAACGACACCTCGTCGTACATTCTGGCGAAAAGAAATTCTCATGCCCGTTATGCGCGACTCAGTTCACGCAAAAAAGCATGATACCGAGACACATAAGGAATGTGCATAAAAAACGGAATTACGAGAAAATCAAATGCGGGGTTTGCAACAAGTTTGTTAATAACATGGAGAAACATATGAAAGGGCACGAGATAAAGCCGTTTGCTTGTGATTGGTGTGAGAAGAGATATCCAgcgaaaaatgcgttaaacCGACATATTGGAGTCACGCATATGGGTAAGGGGAAAAATGAATGTAGTATTTGTGGCAAATCATACATTGATATATCGAAACTGAGAACACATATGAAGAAAAAACACTCAGTTGAAGAGCCTAAAGTTGAAATTGATAATTTCGACGCCGCGCTTCCGGCttatgcaataaaaaataatgttgaaatTGAAAAGACGTGA
- Protein Sequence
- MPEIWNLSALCRCCHADGKFKNLGFAYVTENGVEMYGAMFQETFNIKLNPPPIDASYAICDECISKLRDGYRFKLQVLDCEQKFRTYCQNEVALTSVKIEHESDTESALEEKPVDVINFNETVIKNDDDDDDNLYNDDHHYSDGNDNCIDDEPKNIEEHQALPKIENKQYGCNYKGCIKSFAALKSLRRHRRLCHSDVSVSEVGLKEINDLMRSTSPLSEIIKTESGDLIACKTCGHTFQSNEQLTTHLTKEHGGVLKCPTCKNFYKNKYNLRAHILKMHLKCNNQSFKCEYCEKVYPNKAALKAHENIHTRKRIYICDICNKETVHRTSFINHLKSHYGTLKRYYCDQCGRGCNDASNLRIHIETVHEKLKRFDCHLCGAKFALRRGLKSHLLRHEGKFPGQSKFFVKNGVRYERKCPVCPETFADRLKYRYHMSIHKSDCRKYKCDFCNSQFGTRYSLKRHLVVHSGEKKFSCPLCATQFTQKSMIPRHIRNVHKKRNYEKIKCGVCNKFVNNMEKHMKGHEIKPFACDWCEKRYPAKNALNRHIGVTHMGKGKNECSICGKSYIDISKLRTHMKKKHSVEEPKVEIDNFDAALPAYAIKNNVEIEKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -