Atae044788.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465271.1:9832947-9837080[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.4e-06 0.00033 22.3 0.7 1 22 118 139 118 139 0.95 2 17 0.064 8.9 8.4 0.2 1 23 170 192 170 192 0.95 3 17 0.0013 0.18 13.7 0.1 2 23 199 220 198 220 0.90 4 17 0.038 5.2 9.1 4.6 1 21 223 243 223 244 0.94 5 17 0.00086 0.12 14.3 0.2 1 23 258 281 258 281 0.94 6 17 0.00022 0.031 16.1 2.2 1 23 287 309 287 309 0.96 7 17 0.53 74 5.5 2.6 5 23 319 337 318 337 0.97 8 17 0.88 1.2e+02 4.8 1.8 1 23 343 366 343 366 0.88 9 17 0.00064 0.089 14.7 2.3 2 21 495 514 494 515 0.93 10 17 0.043 5.9 9.0 0.1 1 23 548 571 548 571 0.94 11 17 1.7e-05 0.0024 19.6 0.1 2 23 577 598 576 598 0.96 12 17 0.39 54 5.9 2.1 2 21 602 621 602 622 0.91 13 17 3.7e-05 0.0051 18.6 1.6 1 23 648 671 648 671 0.94 14 17 0.00092 0.13 14.2 0.4 1 23 677 699 677 699 0.92 15 17 0.062 8.6 8.4 0.1 1 23 705 727 705 727 0.97 16 17 0.00025 0.035 16.0 0.2 1 23 733 756 733 756 0.96 17 17 0.0062 0.87 11.6 1.3 2 23 763 785 762 785 0.94
Sequence Information
- Coding Sequence
- ATGAACAAACTGATTCCAGGTGGCCTGTCGTTTCAGGTCGTCGAGGAGACCGGGCTTCCACCTGGATTGTGCTCCAGCTGCACAAAGGATGCCCTCAACTCTTATCACTTCCGGAGACTCTGCAAAGATTCTCATCACACCTGGGACCAGGCTGTTGAATCTCTCTCTTTCATCCAAGAACCGACAGACGAGGACAAAACATACTACGTTCTCTACAACGGCGGCGTCCAAACCATAATCAGAGATCAAGTGTTTAAAGTCAAAACTTCAACTGAAGCTTTGGAGCGATTGACGACGAAAGTGGAACCTAAAGATGAAAGTCCGAGAAAACAACCAGACAAGTTAACACGTTGCAAATGTCCGGACTGTGGGAAAGCATTCTCGATGCCGTATTCTTTAAACCAACACCTCAAAACTGCAAGCAGCAGAGCTTGCACCGAATGTGCAGAAATCATGCACAAGAAAGATTTGAAGAATCATTTGCTTAAAAGACATAAAATAACCATATTCAACTGTGTTTTTTGTTACGAAATTTTCGATTCGAGTGATGATTTAGATTCGCATGTATTACAGCATAGTGATGAAGATGTTATTTCTTGCAATTCTTGCGGACAGATCTTCTCTAACCCCAGAGCTTTGCGAGCGCATTCTTACGCACACAATCTCTTCCACTGCCCAGGGTGCAATTTTAGCTTTGACAATCGAAAGTGCTATAAATATCACTTGAAAGTCTGCAAAAAAAACCCCGGGAAACTAGATTCTAGTCCGGTCTTTGTTTGCGATGACTGCGGCGCGAAATACGACAAAAAACCATCTTTGAAAATCCATATCACGCAGAAACATTTGAACGTCTTACCTTTCACGTGTCAGACGTGTGGCAAACGGACGTCGACGTTAGCTCACTTGCGATCACACGAGACCGTTCACAGTGCAGAAAGGAAAATATATTTGTGTCACTGTGGTTCTCAGTTTCGTACAAACTTAGGTTTTCAACTCCATCAACGCATACACTCGGGTGAACGTCCGTACCAATGCCACGAATGCGGCGATCGTTTTCTTTCGGCGTCTAGACGTTTAGACCATATAAAACGGAAGCACAGATCGACTAAAGACATGCCGCATGGATGTGAGAAGTGTACAGCAAGATTTATTCTAGAAGAAACACTATATCCATCGGGAGCATGCGTGGTTTGCATCAAGGCCCTCTTATCCGCACAAGAATTCATAACCTTTGTACGGCAATCAGAAACCACTTGGAGAAAGGCAACTAACTCCCTTTCAATGCTACCTGAAAGAATCTACCACGCCGCACCTGTGCAATCTATTTACGCAATCATTAAAAAAGATAACTTATCCATCCAAGTTGTCAAAGATAACGCTGGAAACAGCCCAAAAAATATCATAGAGAaattaacccagaaagtgcctcagaaaaaaaagaaggttaAAAAACCTCGACTGGTTAGGACAGGACCTTCTTGTAACTGCAAAGATTGTGGCACGCACTTCCCAAGTCCATATTACTTGAAGCTTCATTTGAAGAACAGCGGACAGAATGATGCGTGTCATTTGTGCGGAGCTATTGTTTTAAGAGGGCAACAAATGAAAGATCACTTGCAGTCGGCTCATAGACAGGTTTCTTATCTTTGTCGGAACTGTCCCGCGTTGTACGAAGTTGAATCTGATCTTAAAAAGCACATTAAAATCGCTCACAAGGCCGGAGCGTTGACGTGTGGTGACTGCGGTCGCACGTTTCCTAGACCGAGTGGCTTCGAAGCGCATTCTCAGATGCACGCTTGTCGCACTTGTAGAGCTTGTGGCGCCCAATTCACGAATAGAGGTTGCTACAGGAAACACAGGTCTCGTTGCGAGCCGACAGCGAAGCCAGACTTGCAAAGCCTTCCTCGCAGCAAACGTTCGAACATCCGCGACCCTGCTACTTACATCTGCGATCATTGCGGCAAAACTTACCACTCGCGTCCTCAACTCAAAAACCACATAATCTGGATTCACATGAACGTTCGTCCACACCAATGCCAGTGGTGTGGAAAGCGGTTTTACACCCCAGCCAGGTTGGCCGAACATAGTGTTGTTCATACTCGAGCTAGAAACTTCGAGTGTGACATTTGTGGCGCGAGATTggtttccaagatggccgccgtgTACCACAGAAGGCGTCACACAGGTGAAAAGCCCTACGAATGTCCTGATTGTGGTGAAACCTTTATATCTGCTTCGAGGAGGACTGAACATGCTAAAAGGAGGCATAACAAAGGCGCGAGGCTGCATTGTCTAGATTGCCCAGCGTCTTTTGTAAGGGGACATGAGCTGAAGAAGCATGTCGAAAAGCTACACAGTAGCGTGAAGCCTAATACGAACATCTCTGTTAATGTGTCAAGTTAG
- Protein Sequence
- MNKLIPGGLSFQVVEETGLPPGLCSSCTKDALNSYHFRRLCKDSHHTWDQAVESLSFIQEPTDEDKTYYVLYNGGVQTIIRDQVFKVKTSTEALERLTTKVEPKDESPRKQPDKLTRCKCPDCGKAFSMPYSLNQHLKTASSRACTECAEIMHKKDLKNHLLKRHKITIFNCVFCYEIFDSSDDLDSHVLQHSDEDVISCNSCGQIFSNPRALRAHSYAHNLFHCPGCNFSFDNRKCYKYHLKVCKKNPGKLDSSPVFVCDDCGAKYDKKPSLKIHITQKHLNVLPFTCQTCGKRTSTLAHLRSHETVHSAERKIYLCHCGSQFRTNLGFQLHQRIHSGERPYQCHECGDRFLSASRRLDHIKRKHRSTKDMPHGCEKCTARFILEETLYPSGACVVCIKALLSAQEFITFVRQSETTWRKATNSLSMLPERIYHAAPVQSIYAIIKKDNLSIQVVKDNAGNSPKNIIEKLTQKVPQKKKKVKKPRLVRTGPSCNCKDCGTHFPSPYYLKLHLKNSGQNDACHLCGAIVLRGQQMKDHLQSAHRQVSYLCRNCPALYEVESDLKKHIKIAHKAGALTCGDCGRTFPRPSGFEAHSQMHACRTCRACGAQFTNRGCYRKHRSRCEPTAKPDLQSLPRSKRSNIRDPATYICDHCGKTYHSRPQLKNHIIWIHMNVRPHQCQWCGKRFYTPARLAEHSVVHTRARNFECDICGARLVSKMAAVYHRRRHTGEKPYECPDCGETFISASRRTEHAKRRHNKGARLHCLDCPASFVRGHELKKHVEKLHSSVKPNTNISVNVSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -