Basic Information

Insect: Aproaerema taeniolella
Gene Symbol: -
Assembly: GCA_949987775.1
Location: OX465258.1:15823252-15832855[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.7e-06 0.00051 21.7 1.7 1 23 245 267 245 267 0.98

2 9 3.5e-08 4.9e-06 28.1 1.6 3 23 275 295 273 295 0.98

3 9 0.00012 0.017 17.0 0.3 1 23 301 323 301 323 0.98

4 9 1.3e-05 0.0018 20.0 1.7 1 23 329 351 329 351 0.99

5 9 2.6e-05 0.0037 19.1 1.7 2 23 525 546 524 546 0.96

6 9 3.4e-09 4.7e-07 31.3 1.6 1 23 552 574 552 574 0.98

7 9 0.0029 0.4 12.6 0.6 3 23 582 602 580 602 0.97

8 9 7.4e-05 0.01 17.6 1.5 1 23 608 630 608 630 0.99

9 9 0.023 3.2 9.8 0.8 1 23 636 660 636 660 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.7e-06	0.00051	21.7	1.7	1	23	245	267	245	267	0.98
2	9	3.5e-08	4.9e-06	28.1	1.6	3	23	275	295	273	295	0.98
3	9	0.00012	0.017	17.0	0.3	1	23	301	323	301	323	0.98
4	9	1.3e-05	0.0018	20.0	1.7	1	23	329	351	329	351	0.99
5	9	2.6e-05	0.0037	19.1	1.7	2	23	525	546	524	546	0.96
6	9	3.4e-09	4.7e-07	31.3	1.6	1	23	552	574	552	574	0.98
7	9	0.0029	0.4	12.6	0.6	3	23	582	602	580	602	0.97
8	9	7.4e-05	0.01	17.6	1.5	1	23	608	630	608	630	0.99
9	9	0.023	3.2	9.8	0.8	1	23	636	660	636	660	0.95

Sequence Information

Coding Sequence: ATGAACCATAAACGGACAAGCAATGATTTAGCTTCGACAAGACAAGCGCCTCGCAAAGCTGCACCCTCAGGTCGACACTCAAATAATCACGACACCGACACAACAGCGCCGTACGTGCTGTACAAAGATGGCGTCGAGAGGGCGCCACCCGGCACGCAATGGGGAGGAGGCATGCTGGACGGCGGGTACCAGCCCATGCAGCACCAGAGCCCCGGCGGGCCCAGTCCGCAGCCCGAACCGCAACTGGCGTCCCCTGCGCCCTCCCCCTacccgcccgcgccgccgcccgccgaCCCCAGCGCCACCAGCGCCGACGAGGCCGCACAACTAGCGCAACAACAGGCTCAGCAACAGGCCCAGCAGCAACAACAGcaacagcagcaacaacaacagCAACAAACCTCCCCTGAACACATGCAGGTCGAACAACAGCTCCAGAACCAGCCCCAGCCGCAGCCCACTCAGGATCACATTGATCGGACCCCCTGCTTTGTCCCCCAGCCGGACTTGCAACAGCAATACACTCCGTATTTCAAGGAAACCAGACCGGCAAGCCACATGCTCAGCACTGGAGGGTTTCCTCTCCACTATCTCAAACAGAACGGTGGAGTATTATCGCTGGAGGGACCTTTAGATCAATATGCTGCACCCGAGCTGCGCCACTTGCCCGATATCGTCCAGCCCGAGCAACCGAAGCCGAGGAAGCACAACCCTAATTCTGAGTTACGATTGTTCAAGTGCTTGACTTGCGGCAAAGATTTCAAGCAGAAGTCGACGCTACTGCAGCACGAGCGCATTCATACCGACTCGCGGCCGTACGGGTGCCCGGAGTGCGGCAAGCGGTTCCGCCAGCAGTCGCACCTGACGCAGCATCTTCGAATCCACGCCAACGAGAAGCCGTACGCGTGCGTGTACTGCCCGCGCTCGTTCCGCCAGCGCGCCATCCTCAATCAGCACCTGCGCATCCATTCCGGTGAGAAGCCCTATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATACCCGCCCCCCATCCCCGCACGCGGCGCCCGCAGCCCTTGCCTCTGCcggccccgcgcgcgatcccctcACAGCCCCCCACGTTCGACTCGGTCTCGCAATTGGCCTTCCTATCAAACAAATTCTCGGTCCCCTCATCGCCCGCCTGATCGGGCGCTCGCGAAACGCGGAACTGACCGCCGGACGTTCCTACGTGTCGCCGCATCTCATCTTCAAGAATGGCACGACGCCGACTCTTTGGCCACAAGATGTTCCGTACCCGCCTGATGAAAACAAAGAGGAGATTCAGTCCACCTTCGGCGACCCGGACGGTCAGAATGGAGAACAACGTGGCTCCTGCTTCTCACCCGGCGACACAGCGCAGTATCCCGCCTACTTCAAAGATACGAAGGGTCTCAATCATACGGTGTTCGGCTCAGGGCTGTCGCTGCCTTATTTGAAAGGTAGTAAACTGCCAGACGTGCTCGGCGGTCGCGCGATGCCGCTATATGTGCGCTGTCCGATTTGCCAGAAGGAGTTCAAGCAGAAGTCCACACTTCTTCAACACGGCTGCATTCATATAGAATCGCGGCCGTATCCGTGCCCGGAGTGCGGCAAGCGGTTCCGCCAACAGTCGCATCTCACCCAGCACCTGCGCATTCACACGAACGAGAAGCCGTACGGGTGCGTGTACTGCCCGCGCTTCTTCCGCCAGCGGACGATCCTGAACCAACACCTCCGCATACACACCGGGGAGAAACCGTACAAGTGCACGCAATGCGGCAAAGATTTCCGGCAAAAGGCCATTTTGGATCAGCACACTCGGACGCATCAAGGGGACAGACCGTTCTGCTGCCCGATGCCGAACTGCAGGCGGCGCTTCGCGACCGAGCCCGAGGTGAAGAAGCACATCGATAACCACATGAACCCGCACGCGGCCAAGGCGCGGCGCGCCGACGCCGCCAAGACGCCGCGGCCGCtgccgcccgccgccgccgtggTGAAGCCGGAGCTGTACTTCCCGCAGTGCTACGCGCCTCCGTTCCAGCAGttcggcgcgggcgcgggcccCGAGTTCAAGCCGACGCTGGGCGGCGGCGCGTGCCTGCCGGCGCAGTGA
Protein Sequence: MNHKRTSNDLASTRQAPRKAAPSGRHSNNHDTDTTAPYVLYKDGVERAPPGTQWGGGMLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPADPSATSADEAAQLAQQQAQQQAQQQQQQQQQQQQQQTSPEHMQVEQQLQNQPQPQPTQDHIDRTPCFVPQPDLQQQYTPYFKETRPASHMLSTGGFPLHYLKQNGGVLSLEGPLDQYAAPELRHLPDIVQPEQPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYTRPPSPHAAPAALASAGPARDPLTAPHVRLGLAIGLPIKQILGPLIARLIGRSRNAELTAGRSYVSPHLIFKNGTTPTLWPQDVPYPPDENKEEIQSTFGDPDGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHTVFGSGLSLPYLKGSKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADAAKTPRPLPPAAAVVKPELYFPQCYAPPFQQFGAGAGPEFKPTLGGGACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00772240;
90% Identity: iTF_00761912;
80% Identity: -