Basic Information

Insect: Aproaerema taeniolella
Gene Symbol: -
Assembly: GCA_949987775.1
Location: OX465271.1:6639501-6654224[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0014 0.19 13.6 0.5 1 23 90 112 90 112 0.94

2 20 3 4.1e+02 3.2 0.1 2 23 140 162 139 162 0.93

3 20 0.014 2 10.4 1.0 1 23 184 206 184 206 0.97

4 20 0.00021 0.03 16.2 0.1 1 23 210 232 210 232 0.96

5 20 0.00099 0.14 14.1 1.3 1 23 237 260 237 260 0.91

6 20 0.00057 0.079 14.9 2.7 1 23 266 289 266 289 0.97

7 20 0.00011 0.016 17.0 0.5 1 23 296 319 296 319 0.97

8 20 0.00045 0.062 15.2 0.6 1 23 325 347 325 347 0.97

9 20 0.1 14 7.8 0.8 1 23 550 573 550 573 0.92

10 20 0.022 3.1 9.8 1.3 2 21 599 618 598 619 0.94

11 20 0.22 30 6.7 1.6 1 23 660 682 660 682 0.92

12 20 0.0047 0.66 12.0 0.2 2 23 710 732 709 732 0.92

13 20 3.8e-05 0.0053 18.6 4.0 2 23 756 777 755 777 0.97

14 20 0.048 6.6 8.8 0.3 2 23 781 802 780 802 0.96

15 20 0.028 3.9 9.5 5.2 1 23 807 830 807 830 0.96

16 20 2.8 3.9e+02 3.2 3.5 2 23 842 864 841 864 0.90

17 20 0.033 4.6 9.3 0.3 1 23 870 893 870 893 0.96

18 20 8.5e-06 0.0012 20.6 2.2 2 23 898 919 897 919 0.96

19 20 0.00032 0.044 15.6 2.1 1 23 925 947 925 947 0.97

20 20 0.0012 0.17 13.8 2.5 1 23 953 976 953 976 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0014	0.19	13.6	0.5	1	23	90	112	90	112	0.94
2	20	3	4.1e+02	3.2	0.1	2	23	140	162	139	162	0.93
3	20	0.014	2	10.4	1.0	1	23	184	206	184	206	0.97
4	20	0.00021	0.03	16.2	0.1	1	23	210	232	210	232	0.96
5	20	0.00099	0.14	14.1	1.3	1	23	237	260	237	260	0.91
6	20	0.00057	0.079	14.9	2.7	1	23	266	289	266	289	0.97
7	20	0.00011	0.016	17.0	0.5	1	23	296	319	296	319	0.97
8	20	0.00045	0.062	15.2	0.6	1	23	325	347	325	347	0.97
9	20	0.1	14	7.8	0.8	1	23	550	573	550	573	0.92
10	20	0.022	3.1	9.8	1.3	2	21	599	618	598	619	0.94
11	20	0.22	30	6.7	1.6	1	23	660	682	660	682	0.92
12	20	0.0047	0.66	12.0	0.2	2	23	710	732	709	732	0.92
13	20	3.8e-05	0.0053	18.6	4.0	2	23	756	777	755	777	0.97
14	20	0.048	6.6	8.8	0.3	2	23	781	802	780	802	0.96
15	20	0.028	3.9	9.5	5.2	1	23	807	830	807	830	0.96
16	20	2.8	3.9e+02	3.2	3.5	2	23	842	864	841	864	0.90
17	20	0.033	4.6	9.3	0.3	1	23	870	893	870	893	0.96
18	20	8.5e-06	0.0012	20.6	2.2	2	23	898	919	897	919	0.96
19	20	0.00032	0.044	15.6	2.1	1	23	925	947	925	947	0.97
20	20	0.0012	0.17	13.8	2.5	1	23	953	976	953	976	0.96

Sequence Information

Coding Sequence: ATGTTAAAAGATCATAATAATGTTCATAAATCTATTAAGGAAAACGACATAATGAAAGCTTGTAGCAAATATATCAGCACTCACGAGTTGGTTAAAGTGAATGTCATCGACGTAGGTTGTGAAGTTCAAAACCAGTCCGAAAAAGAAGATTTCCGAGGAAAACTGATCAACTGGACGAGCCAACAAGAAAGACTTAACAGAATCAAGCAAGCTTCGATCTTGCTAGAATGTTCCACAATATGCCCCTTCAAATGGATGAAACATAACTACATGTGCATATACTGCGATGAGAAATTTACCGATCCAGAAAGCCTTAACACTCACAATACAACGCACAGCCTAACTTACGATGAAATCGAAgaaatcttaaataaaaataaaaaatacattttcgtcAAAGCCAACGTCATAACCGTGACTTGTAAACTTTGTGACGATGCAATACAAAACTTGAATGAATTAAGAGTTCATTTGTTGAAAACGCATCGGAAGAATATCGATCTGGAATCAAGTGATGGAGTGTTGCcgtttaaaattacaaaaacagaTTTCGATTGCGCTTTATGTTCAGCAAGATTTGAAGAGTACACGACTTTAAACCACCATATGAACGTACACTTCCCTAATTTTATTTGCGAGCAATGCGGAACTGGTTTCATAACACCAGACAGACTCCGAGCTCATCTTTTCTCCCACGAAACTGGAACGTTTCGTTGTGATGAATGCGACAAAGTTTTCAGATCCAACAACTCTAAAAATGAACATTTCGACAGGGTGCACAAAAAGGTGAAACGTCACCGCTGTCCGACATGCggagaaaatttcaaaaactattaTCAAAGGAATAAACACGTGTCGACGGTCCACGGTTTGAAATTAAAAGAATTTCGATGTGTCACTTGCGACAGAGTTTTCACAACAAGTGGGAAACTAGGAATCCATAAACGTATGGTGCATTTGAAAGAGAAGAGGTACGCATGCGACTTTTGCGAGTGGAAATTCTTTAGTAAAACGGAATTAGAATCACATATGGTTAGACATGGGGGACTCATCCAAGAGAGTGACTCATCAATAATTGTGAAAAACGAAGACGGAAGTCACATCGAACTCACAGTATTGAGAACACCAATACCTTTGGACAGTCTCGAAGTAACTTACGAAGAAAACCAGACCAAGATCAACAAGAAAGTAAAACCAGCTTTTGATCCAACGAAAAGAGGAAATAAAAGATATATAAAAGAAGCTGGAGGAGTTGCTAAAAAAGAAAACGAAGAACACAGCGAAAACGTTGATCTGGTGAGGCTGAATTCACAGAATgataaaaaaacagaaacagCTTCTACTCTAACAAGAAAggaaaagaaaatcaaaaatatgaaAGAAGCTAGACTCGTTAAAAAAGAACAAGACAACAAAGATGTTGAAGAAGTTAATATGGCGATGCTTAAAGAACCAATCGCTTTGGACGAAATCGACTGGAATAATGAAGGGAAAGCTGTCACTTTTAAAGTAAAAACTATTAAAACGAAGGTTCGAAAGCGACCGTCTAAACGAAGTGAACCGGTAGAATTTGAGTCATGGAAACAAAACGCTATAACAATCTTCGAAAATTCCTCAGTGTACCCTTTCGTTCACGTCAGCAACAAATATAAATGCTTCTTATGCTCTAAATCTTTTCTAGAACCAAATTCTCTCAAAGAACATTCTGCAAAAGAACATACTATAAAAGAATTGAAACGAGAGTTGGCGAACAAAGATAGAGATACAAATATCAAAGTTGATGTCACGTATTTACACTGCAAAATATGTCAGCAAACCTTGACCGATTTGAATCATCTCAAACTTCACTTGAAGGGAAAAGATCAGCGCCCGGGGCCGAGGACGAGTATTTGGCAAATGACGATATCAGAGCGACAGAACGCTGCGACATTCCTCGAGAACACGACAGTCAACCCTTTCTTTTACCAGCAGGCgaatttcaaatgtttttactgCAACGAAGTCTTCCCTGAAGTACATTCAGTGCTTCTGCACACATCGTATCATACCACACCAGACAGAACGGCCTTGCTGAAACAGTATTTGAGAAAAGGGAAGAGAGTTATCAAAGTAGATATATCAGGACTAAAATGCAAGATTTGCGAGCAAAAATACTCAGATTTAGACGACATTAGAAAGCATTTGGCTGCGAATCATAAAAAAGAATTCAATTCAGCGGGAAATGGACTTATGGCGTATAATTTAAGCACCAACAACGGCCTTCTAACCTGTCATAAATGTGAAAAGACTTTCAACTCATTCTTTTTGTTAAATAGGCATATGAATGTCCACTTTAGTGTAGTTTGCGAAACATGCGGGTTAGGTTTCATGTCCCATCAAAGGCTGATCAACCATAGGATTGTTCACCAAAACGGTGTGCATCGTTGCGAGAAATGCCAAGAAGTTTTCCAAACAAAGCTAAAGTTAAGATACCACATGTTCAAAAAGCATGAAGtgacgaatacaaagaaaattaagccgcTGAAATGTCCGCATTGTTTGGAAAGGTTTTCTGAGCATTACAGGAAAATGACGCACTTGAAAGACGTGCACGGAATTACGTTTACGTTCGAGTGTCCGGCTTGTAAGTCGATTTTTCCGACTCGTAGAGCGTTGACAGAACACACGACGAAACAGCACACGCAGAAGATCCAGTGTAAAATTTGCGGGAAGTGTTTTGGGACGAAATCATTGCTGAAAATGCACTCGAGAGGTCACACTGGGGAGAGAAACTTCTTCTGCGCGATCTGTCAGAAAGCGTACATGCATGAAAGGACATTAAGGCAGCATATGCGGGTGCATGGACCGGTTTGGAAGTTCTCGTGTTCGGAGTGCGGCAGCGGGTTCCATAACAGAAATGATTATAATAAGCATATGAAGCAGTGGCATCCGCAATGGCAATTCAAAACGAttgtaaagaactttggttctGAAGTCatgaactga
Protein Sequence: MLKDHNNVHKSIKENDIMKACSKYISTHELVKVNVIDVGCEVQNQSEKEDFRGKLINWTSQQERLNRIKQASILLECSTICPFKWMKHNYMCIYCDEKFTDPESLNTHNTTHSLTYDEIEEILNKNKKYIFVKANVITVTCKLCDDAIQNLNELRVHLLKTHRKNIDLESSDGVLPFKITKTDFDCALCSARFEEYTTLNHHMNVHFPNFICEQCGTGFITPDRLRAHLFSHETGTFRCDECDKVFRSNNSKNEHFDRVHKKVKRHRCPTCGENFKNYYQRNKHVSTVHGLKLKEFRCVTCDRVFTTSGKLGIHKRMVHLKEKRYACDFCEWKFFSKTELESHMVRHGGLIQESDSSIIVKNEDGSHIELTVLRTPIPLDSLEVTYEENQTKINKKVKPAFDPTKRGNKRYIKEAGGVAKKENEEHSENVDLVRLNSQNDKKTETASTLTRKEKKIKNMKEARLVKKEQDNKDVEEVNMAMLKEPIALDEIDWNNEGKAVTFKVKTIKTKVRKRPSKRSEPVEFESWKQNAITIFENSSVYPFVHVSNKYKCFLCSKSFLEPNSLKEHSAKEHTIKELKRELANKDRDTNIKVDVTYLHCKICQQTLTDLNHLKLHLKGKDQRPGPRTSIWQMTISERQNAATFLENTTVNPFFYQQANFKCFYCNEVFPEVHSVLLHTSYHTTPDRTALLKQYLRKGKRVIKVDISGLKCKICEQKYSDLDDIRKHLAANHKKEFNSAGNGLMAYNLSTNNGLLTCHKCEKTFNSFFLLNRHMNVHFSVVCETCGLGFMSHQRLINHRIVHQNGVHRCEKCQEVFQTKLKLRYHMFKKHEVTNTKKIKPLKCPHCLERFSEHYRKMTHLKDVHGITFTFECPACKSIFPTRRALTEHTTKQHTQKIQCKICGKCFGTKSLLKMHSRGHTGERNFFCAICQKAYMHERTLRQHMRVHGPVWKFSCSECGSGFHNRNDYNKHMKQWHPQWQFKTIVKNFGSEVMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -