Atae023233.2
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465252.1:9272637-9285937[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 1.6 2.3e+02 4.0 0.1 3 17 286 301 285 302 0.91 2 24 0.0034 0.48 12.4 1.1 3 23 652 673 651 673 0.96 3 24 0.37 52 6.0 0.3 1 22 1052 1073 1052 1073 0.95 4 24 7.3 1e+03 1.9 0.3 1 22 1116 1137 1116 1139 0.82 5 24 0.036 5.1 9.2 0.9 2 21 1149 1168 1148 1169 0.94 6 24 5.2 7.2e+02 2.4 0.1 3 23 1178 1199 1176 1199 0.89 7 24 0.025 3.5 9.7 0.2 2 23 1218 1240 1217 1240 0.96 8 24 0.0011 0.15 14.0 3.4 1 23 1246 1269 1246 1269 0.96 9 24 0.14 19 7.4 0.0 1 23 1293 1316 1293 1316 0.90 10 24 0.02 2.8 10.0 3.4 1 23 1321 1343 1321 1343 0.97 11 24 0.021 2.9 9.9 0.3 1 23 1349 1372 1349 1372 0.95 12 24 0.0011 0.16 13.9 1.3 1 23 1385 1407 1385 1407 0.98 13 24 0.00019 0.027 16.3 1.8 1 23 1456 1479 1456 1479 0.97 14 24 0.00047 0.065 15.1 3.1 1 23 1539 1562 1539 1562 0.96 15 24 0.0024 0.34 12.9 1.4 3 23 1587 1608 1585 1608 0.95 16 24 0.095 13 7.9 0.1 2 23 1614 1636 1613 1636 0.93 17 24 0.011 1.5 10.8 0.2 1 21 1679 1699 1679 1700 0.95 18 24 0.0013 0.19 13.7 0.6 1 23 1710 1732 1710 1732 0.93 19 24 0.00012 0.017 17.0 0.3 2 23 1821 1843 1821 1843 0.93 20 24 2e-07 2.8e-05 25.7 1.4 3 23 1850 1870 1849 1870 0.98 21 24 0.22 31 6.7 0.3 3 23 1891 1912 1890 1912 0.89 22 24 0.2 28 6.8 0.0 1 23 1933 1955 1933 1955 0.97 23 24 0.023 3.2 9.8 0.7 1 23 1961 1984 1961 1984 0.95 24 24 0.00016 0.022 16.6 0.4 1 23 1993 2016 1993 2016 0.97
Sequence Information
- Coding Sequence
- atGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAGCCTCCCGACCTCGCTTCCAAAATCAAGGATTGCGTGTCTGTGCAAATAACCGAAAATGATGACCTGCCAACAAATGTCTGCAGAAAATGTATGGACAATGTTCATAACTGGCACATTTTTAAGTCAGTGTGTGAGAGGACACAAAACAAACTACTGTCTCTGACTAAAAAGGATGGCAGCCAACTAGAAGAGGTGAATATAAAAAGTGAACCATTATCTGATGAAGCTTATGATGATGGAGTGATTATTGATGGCACATATCCTGACTCAGAGAATGTTGGCCCCTCGAGTAAAGTGCAGCCTGAAGGCCCACCCATCTTGGCTTCATTGGGGCTTACACCGAGGAGTGATAAGAAATATGTGGATCCACGAATGGACTGGCAACGTGTTCATGCAATATTGGATATCATACAAGATGATGAAGTTATAAACTCTCTACATTCTACTGAAGAAACAGATCATCTCCAGCTCTCTGATCATGATTCTGACACTGATGCTGAACTTACTGATGATGTGGATCAGAAttatattgacacttctcaggGGTATATTGGCAAAAATCTTAAACTAATTGCCACAACACCACTAATATCACAATCCGAAAACTTAATGAAAAGCAAAGAATCTAATGATTTTAGGAAACGGAAACTGATGCCTTTAAAACAGTGCCCTGAACCACAATATGCTTGGAAACTGTTTTTCACCGATGACATACTAGAGTTGATTGTGACTTCCACCAATGAGAATATTGTCAGAAACTGTGAGGATATTTGTGATGAATCATTGACTAGTAAAAGTGAATTAAAAGTTCTTTTTGGAATATTGTACTTGCATGGCATAACGAGGCCAATCCATCAAAAATGCAGTGACCTTTGGCACAATGAATTTGGTGTGATTTGTATTGAACCAGCCATGTCATTTgatagatttatatttttactggAGTACTTAGCTTTTGATACAGAAGACGATGTCAATGTTTTGGATGTCATGAAACCCATCCGTAAAGTGATTGAAATGTTTTCAAGGAATTGTAAAGAAGCCTTCGATACAGGAAGTATTGCTGTAATTGATGAGGTTGTGGTCCCAGTAAATGGGCCTTGCCCTTTTCGCTACGAAAGCAAGAAAAAGCCAATAAAAACTGGTATTAAAATGGTTTTACTAGTAGATCCAAACAATTTTTATGTGAGTAATTTAGATGTAATCACAGATCCTTACACACAACCAGAAAAAATGGTTTTCAAGCTAGTGAAGCATTTAGATGGCACCAAGAAGACAGTAATAATGGACAGCTGGTTTACTTCTGTGTCTCTAATAGATGAATTGTTTGACAAGTTTAAGCTTCATAGTGTTGCTGCACTAAATCCAAAAGACGAATTAATACCACCCCTATTCACATCCAAATGTAGAACTGCGAAATCCCTTATGACTGGCTACATAGATGAAAATATGACCATAAATTCTTATCTTACCAAAAAATTTAcatgtgtaaatattttatcaaataatcCGAGGTTCTATGAAAGTAATCCTGAGGTTGTGTCCACAtataagagaaatcagtctgcTGTCGCAGTGCTAGATGTTCTTATGCACTACTATACTACTGctcaaaatacaaataattggGCCTTATCTTTGTTTTTTATGATGCTGAACATTGCATCCATCAATGCCCAGGGAATTGAAAGCGAGAAAGatgaggaagaagaagaggaagaggaTGAAGAAATGTCTGAGTCGGTACAACAGTTTGCAAAGGTTCCCACCATGCCCGAGGTATCCATCACGGTGATGCGTCCATCTGGAGAGACTTTGAAGCCTCGTCAAGGCTTCCAGCAGATAGCCTCCAAAGATTGCCTTATTTGCGGCCGCACTTACAGGTACTCGCACAACGCCCGCCGTCACGAGCTTACTGCTCATAAATttgacagatacacaaacaaaaTCACCCAAAAAAGATCATTTTCGTATATGCAACCTAAACTTAGACCAAATCCATTCAACCCTAAAGCTCGACTCATGCCAAATCCTATTAGCCACAAAATGCAGCTACTTCCGACACCTATCCCAGCCAAAATTATGGCGAACAAGAAGATTGCCGCTCCGCCGAAACCAATCCCCGTCAAACCGTCTAAAACACCACAAAATAATTTACCTTATCCTCTTCGCATTAAAGCGCTCAAAGAtttgcaaataaaaaagaaagagccacaaatattaaaaactctGCTTACAACAAAGCCAGAGGTGCTGGTTTCTGAGCCGGAAATTTTGAACTCTGCTCCAGAGAGTCCTGAAACGTTAATTTCAGAGCCAGAGATTGCGTCTTTTCAAGTTGAGACTATCTTATCCGAACCTGATGGATTTGACCAAAGTCAAGGTGATGAAGTGGATGGGGAAATGCACAACAGTCAAAATCAGACATACGATACTGTCGACATGGAATCTGATAACGAAATTGAGATTGCTCGACAGAAGGAGGCTGCTGAGGGTGACAGTGAATTACATGCTGATGATCAAGATGTAGACGAAAACATGCAACAAGATGATAATCCTGATGACCAGGCTGATGATCATCAGAATGAAAACgcagaagaagaagatgaaatTCAGGAAGAAGACAATTTGGAAATCAGGGAGGAAGAATCTAAAGAAGGTGACGAAGGAACTGAAGAACCGGAAAGAGAACATGATAATCAAGAAGAAAATGAAGACGACGACGAGGAACTTCCACCTATGGAACTGGCTCCAGTTGTTGAAATCAATGAGGATATGAATACCAACAACTCTTTTAATAGTGAAGTAAATGAAGAAGAGGATGAGGAACTTGACGAATCGGTAGACCCCAATGAGACTGCAGATGAAGAAGCTAGTAGCCAAAAACTTGATCCTAACAAAGTATATGTTACTAAAGCCCAAAGAGAATTTATAGAAAAGTATCGTGACATAATTCAACAGATTAACACAAAACGTTGTCTTTGTTGCGACCGGGAACATCCCCGCAGAAAAGCTGTTATTCAACACCTGCAGAAAAATGGACATAAGGTACCAAAACATACGTGCTATAATTGTGTGGTTACGTTTGGGCACATTGGCGCTTTACTAAGTCACATGAGGTCCAATTCTTGTACTGatttgtggaaaattatttatgacgAAAACGGGATTTCCGATGATCAAGTTACCGCAGACGAGGAACCGAAAGACGCAAAAGTCAATTATAAAGACATCTTCAATGCAAGATCTTATGCTTGCAAACTATGTCCAGCCAAATTCCAATTGAAACAATTTATCATGAAACATGTGCTAGATGTACATGAAGACGGTCAATCTCTAGTGCCATTACACTGTGTGCACTGTGGTGCTAGGTTCAAAGAAAGAGTTCTGTGGAAAAAACATATTCGTAATGGTGACTGCACTGTTTACATTGCGTGCGACTTGTGTCctgataaatttaaaaacatgcaAGATTTCAACGATCACGCATTAGCTGTGCATGCTGGCAGCTTCGATCCTGACAGTCAAAGTAAATGCGTCGATGGGCGAATGACCGAGTGTCCATTATGTGGAAAGAAAAATCCTACTTACTTGAATTTGGTAAAACACTTGAAGACAGTGCATGGTGAAGATAAACCGCATTATTGCAAACACTGCGACGCTAAGTTTGAACAAACAGCTGATCTGaataaacatatttatacaGAGCATTCATCATTGGGCATGGAAAGTACAGAACCGGATATGTCAATTGTTAAGGAAGAAGTTGAAGAGTATCACTACTCTTGCACGGAATGTAATGCCATATTTGAAACTGTTGATGCCTGGACAGATCATCAGGTAGCGGAGCACAACCAAATCGCACATCACTGTGATCAGTGTGAGAAAAAATTCTTAAGGCCATCAGAACTAGCTGAACACAAGAACACACACTTACGGGTCAAATTTTATCCTTGCAGTGTCTGTTCCAATTCTTACAGCACTCCGCAGAAACTTTCAGAACATGTACAACAATCGCATCCCGGTGCCGGAGCCGCATCTGCTGCAGAATCTGAGTTTTATTGTGACATATGCATTAGGTCATTTAAGAGTCGCCAAGCCTACTCTAACCACATGCGCATACATGCGAAAGTTCCCACTACCAACAGGAAACCAGGAGATTCTAAAAGTTTTGCACCTCAGGTTATTGGTAAACCTATCAAACAATTCCACATTACGCAGCCTCCAAGTCTAGTTTTTAAGCCGAACTGTAATGTTCCTAACGCTCCTTACTCTTGTGATATTTGCGGTAAAGGATTCATGCATAAGAAAAACATATGGAAACATAAGAAGGTGTTGCATGCTGACCTTCTAAATGATAGGAATGATAGTGAAGAGAATACTATGCATGCATCTACGGAAGAAGATGAATACAATTTGGATGAAAATGGAGCTATTCTGTCAACTCCGCAATTTAACAGCTTTAACTTCTCTAGCTTTACAAACAACGTTCAGCAACAGTTGACTCAAGGAGAAGTTTATACTTGTGATATTTGCTACCAGAAATTCTCGTTCCGAGACAGTTTGAGAAAACACAAACGCGCTAAACATGGCATCAAAAATCCTTCATCATTGACTGAAACTCAAACTCAAGCAATATCAGGAGAAGGAGGCAGATCAAATTGCACAATCTGCAAGATAAGCTTTGCTGACAAAAAGTCTTATTATCGTCATAGAAAAAATGTTCACAAATCTACAACGCAAATGTGTAAGATTTGTGGCAAGCCCTTGAATTCGACACTTGAACTTTACGAGCATTTGAAAGCGGCTCATGCACGCGAATTGTTAGGCTACAACGCCAACCAAGGTTCCAGTAAATCTCAGGACAATCCAGAGTTAGACATTGAATATGAAGGCGATCAGGATAGCGTAGATCCGAGTGTAGATTATCAAGCCCGTTACCCATGTGATACATGTGGCAAACAATTTGTGGGTTTACTAGCTCTGCAAAACCATCAGTGCATAAATCAAGTCGCTCAACAGCCGCAGACGTTTGATTGTGAAATTTGTCACAAGAGCTATACGTCAATAGCGGCCTTAAAGAGTCATCGTGGATGGCATTTACGGTCACCAGACGGTAAAGCGGCGGCTAACAATACCGGTCTGTGGATGCCTCAGCACAAGGTGACGAGCAAAGTGAGCAAACATGAAGTCGTCGATCACGCACAATTAGGTCGAGTCGCCCACTCAACGCCCAATGTGGCTAAACGAAGACTTCCACCAGAGGTAGAGGTTACAGTCGTAAATCCAAATAAAAAGCTTCGATCAGATGACTCCGTCGAAATAGACCAGCAGAACAATTCATCTAGTGGAATGGAAGATCGGTATTGTACGATATGCGACAAAGAGTTCACGAAGCGCGCTGCATATCAACGCCACATGGATGAGGTACATCAACCCAACTCCGTGTTCTGTCCTATTTGCGACAAAAGCTTTACACGCAAGTCAACATTGCTCGTTCACATGAAGAAGCACTATGAAGGTGGGGAGGGAAGTTCCTCTGGTGTCAACCACGGTGACGAGGATATGAACGCGTGCGAGGTGTGCGGCGCTCAGTTCGACAGCGCGCAGGCGCTGCGGGTGCACTGCCAGCGCCAGCACGCGGAGGAGTCCGACCACGACTCCGAGGACGACGGGGGCGGCGCGGCGCCGCCGGGCGAGTTCACGTGCGCGCAGTGCGGGGACGGCGTGGCCACGCCGCGGGACCTCATCGCCCACCGCACCATGCATGCCACGCCCACTAAATACTTCTGCAACATTTGTAAGGTATACTTCGCCAGAGGTCAGGACCTCACCTCTCACACGCGGGCGAGGCACGCCGACTCCGAGAAAAGCGCTATGTTCCCTTGTGCCATGTGCGACCGATTCTACATGAATAAGAAGAGTTTACAGCGGCATATCCAAGTAGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPDLASKIKDCVSVQITENDDLPTNVCRKCMDNVHNWHIFKSVCERTQNKLLSLTKKDGSQLEEVNIKSEPLSDEAYDDGVIIDGTYPDSENVGPSSKVQPEGPPILASLGLTPRSDKKYVDPRMDWQRVHAILDIIQDDEVINSLHSTEETDHLQLSDHDSDTDAELTDDVDQNYIDTSQGYIGKNLKLIATTPLISQSENLMKSKESNDFRKRKLMPLKQCPEPQYAWKLFFTDDILELIVTSTNENIVRNCEDICDESLTSKSELKVLFGILYLHGITRPIHQKCSDLWHNEFGVICIEPAMSFDRFIFLLEYLAFDTEDDVNVLDVMKPIRKVIEMFSRNCKEAFDTGSIAVIDEVVVPVNGPCPFRYESKKKPIKTGIKMVLLVDPNNFYVSNLDVITDPYTQPEKMVFKLVKHLDGTKKTVIMDSWFTSVSLIDELFDKFKLHSVAALNPKDELIPPLFTSKCRTAKSLMTGYIDENMTINSYLTKKFTCVNILSNNPRFYESNPEVVSTYKRNQSAVAVLDVLMHYYTTAQNTNNWALSLFFMMLNIASINAQGIESEKDEEEEEEEDEEMSESVQQFAKVPTMPEVSITVMRPSGETLKPRQGFQQIASKDCLICGRTYRYSHNARRHELTAHKFDRYTNKITQKRSFSYMQPKLRPNPFNPKARLMPNPISHKMQLLPTPIPAKIMANKKIAAPPKPIPVKPSKTPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEILNSAPESPETLISEPEIASFQVETILSEPDGFDQSQGDEVDGEMHNSQNQTYDTVDMESDNEIEIARQKEAAEGDSELHADDQDVDENMQQDDNPDDQADDHQNENAEEEDEIQEEDNLEIREEESKEGDEGTEEPEREHDNQEENEDDDEELPPMELAPVVEINEDMNTNNSFNSEVNEEEDEELDESVDPNETADEEASSQKLDPNKVYVTKAQREFIEKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTDLWKIIYDENGISDDQVTADEEPKDAKVNYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSLVPLHCVHCGARFKERVLWKKHIRNGDCTVYIACDLCPDKFKNMQDFNDHALAVHAGSFDPDSQSKCVDGRMTECPLCGKKNPTYLNLVKHLKTVHGEDKPHYCKHCDAKFEQTADLNKHIYTEHSSLGMESTEPDMSIVKEEVEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGAGAASAAESEFYCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGDSKSFAPQVIGKPIKQFHITQPPSLVFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMHASTEEDEYNLDENGAILSTPQFNSFNFSSFTNNVQQQLTQGEVYTCDICYQKFSFRDSLRKHKRAKHGIKNPSSLTETQTQAISGEGGRSNCTICKISFADKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSSKSQDNPELDIEYEGDQDSVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVAQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKHEVVDHAQLGRVAHSTPNVAKRRLPPEVEVTVVNPNKKLRSDDSVEIDQQNNSSSGMEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPICDKSFTRKSTLLVHMKKHYEGGEGSSSGVNHGDEDMNACEVCGAQFDSAQALRVHCQRQHAEESDHDSEDDGGGAAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKYFCNICKVYFARGQDLTSHTRARHADSEKSAMFPCAMCDRFYMNKKSLQRHIQVAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -