Atae041433.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465269.1:1016657-1047376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0025 0.35 12.8 4.7 1 23 360 382 360 382 0.98 2 23 0.017 2.3 10.2 0.0 1 23 400 423 400 423 0.96 3 23 0.0018 0.25 13.3 1.3 2 23 434 455 433 455 0.96 4 23 0.00038 0.053 15.4 1.2 1 23 461 483 461 483 0.95 5 23 0.00013 0.018 16.9 2.3 2 23 490 511 490 511 0.97 6 23 0.0012 0.17 13.8 2.3 1 23 517 542 517 542 0.95 7 23 0.0012 0.17 13.8 2.3 1 23 548 573 548 573 0.95 8 23 0.0012 0.17 13.8 2.3 1 23 579 604 579 604 0.95 9 23 0.0012 0.17 13.8 2.3 1 23 610 635 610 635 0.95 10 23 0.0012 0.17 13.8 2.3 1 23 641 666 641 666 0.95 11 23 0.0012 0.17 13.8 2.3 1 23 672 697 672 697 0.95 12 23 0.0012 0.17 13.8 2.3 1 23 703 728 703 728 0.95 13 23 0.0012 0.17 13.8 2.3 1 23 734 759 734 759 0.95 14 23 0.0012 0.17 13.8 2.3 1 23 765 790 765 790 0.95 15 23 0.0012 0.17 13.8 2.3 1 23 796 821 796 821 0.95 16 23 0.0012 0.17 13.8 2.3 1 23 827 852 827 852 0.95 17 23 0.0041 0.57 12.2 2.4 1 23 858 883 858 883 0.90 18 23 0.0012 0.17 13.8 2.3 1 23 889 914 889 914 0.95 19 23 0.0015 0.2 13.6 2.0 1 23 920 945 920 945 0.95 20 23 0.0012 0.17 13.8 2.3 1 23 951 976 951 976 0.95 21 23 0.0012 0.17 13.8 2.3 1 23 982 1007 982 1007 0.95 22 23 1.3e-06 0.00018 23.1 2.0 1 23 1013 1035 1013 1035 0.97 23 23 0.01 1.4 10.9 0.1 1 22 1041 1062 1041 1062 0.96
Sequence Information
- Coding Sequence
- atggaAGATATTTGCAGATTATGTTGCTCAACAAAATTCGTGAACAATTATATATTTGATGAGGAGAATGCTTTGTATTTGAAAATGTCATTATACTTGCCAATCAAGGTGTTCAAGAACGACCGACTGCCGCAGAAGGTTTGCGACCGCTGTAGCTGCAAAGTGAACGACTTTTACCAGTTCTGCAACGAAACAATCGAAGTTCAAAACAGGTTGCGTGCAGTGTTGTTGTCTACAGCGGTTAAAATTGCAGATTCAATAGACCTAACTCAGATCAAGTATAATGAATTGTCACCCCCGCCTATTCAACATCTTGGTTCTGTTCAAAAAGTTGAACCGAACTTGGAAAACCATACACCAACCTTTGAAGAGTTAAAAACGAGTATAAAACCTGAAGTTGCTAAGACATCAGTGCAACTACCCACATGTGATCAGAGCACACAAACAGAGGTCGAGTCAGCTGAAGATCCTGGTCCTGCCAAAGAAATAAACATTGATGTACCATTGTCACTAGTGAGAGTTAAAGAGGAACCTAAAACAACAGATGGTGATTTGCCAATAGCAGTGAAAACCGAAGATGACTTCCCTTCAGACAATTACTTCTACGAAACTAACCTGCCATCAGACAACAGCGAAGATGACATGTCTCTGATACAGTTTCAGAAAAAGAAACGGTctaaaaaaCTAGCGAATGGGGACACAAGTAAGAGAAAACGTAAGAAAAGCAGTATGAAGAGCGAGTGGGACATGCTGATGCGAGCGCTGCCGGAGGGCACCGCCCTCACTGTGATCGACAACGCACAGGATGTCAAGGTGGCAGTGAAGCAAGAGCTGGAAGCCGGAGTGAAGGGCGAGCTGGACACGTTCCACTGCTGCATGTGTTTCAACCAGTGCTACAGCCGGGGGGAGATGTTACAGCATTACAAGTCGCACGCGGCGGGCGAGGCGGCGCGCGCGCCCACGCCCCCGCCGCCCCCCGCCGCGGACCCCGTCAAGTGCGCGCGATGTCAGAAGAGGCTGGACCGTGCAACGTGGGCGTCGCACTGGCTACGTCACTGGGAGCGGGACCGGCGGCCTTATCGCTGCTCTCTGTGCGAAAAGTCATTCAGAGATCACCACCAGATTCTTAAACatgGGCTGACCCATAAGTGGGGTGAAGACGGCACGGGCCCGGCGCCGCCGTGCCCCGAGAAGCGGTTCGTGTGCGACCTGTGCCCCGAGGGGTTCGTCTACATGCGGTACCTACTCGCGCACCGGGCCCGGGCGCATCCTGAGGCCGTAGGTCGCGCGCTGGCCCTTCGTTGCTTCGTGTGCGCGCGCGAGTTCGCTCACCTCAACTCGTTACGACGACACCTGCGCGCGCACTCCGGCGAGAGGAACTTCCTCTGCAACATCTGCGGCAAGGCCCTCTCCAGCCGGGAGCATCTCAAGTTCCATATCCGCATCCACACCGGATACAAGCCCAACGTCTGCAAGACGTGTGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGTGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTTATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAATTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGTGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGTAATGTAATGATGACGTGCGGCAAGGGGTTCGTGAAGAAGTGCAACCTGACTCTGCACGAGCGCGTGCACTCGGGCGAGCGGCCGCACGTGTGCCCGCACTGCGGGAAGGCGTTCTCGCAGCGCTCCACGCTCGTCATACACGAGAGATACCACTCTGGCGCGCGTCCGTACGTGTGCTCGCTGTGTAACCGCGGGTTTGTGGCCAAGGGACTGCTCTCCATGCATCTCAAGACCACCTGCATCTAG
- Protein Sequence
- MEDICRLCCSTKFVNNYIFDEENALYLKMSLYLPIKVFKNDRLPQKVCDRCSCKVNDFYQFCNETIEVQNRLRAVLLSTAVKIADSIDLTQIKYNELSPPPIQHLGSVQKVEPNLENHTPTFEELKTSIKPEVAKTSVQLPTCDQSTQTEVESAEDPGPAKEINIDVPLSLVRVKEEPKTTDGDLPIAVKTEDDFPSDNYFYETNLPSDNSEDDMSLIQFQKKKRSKKLANGDTSKRKRKKSSMKSEWDMLMRALPEGTALTVIDNAQDVKVAVKQELEAGVKGELDTFHCCMCFNQCYSRGEMLQHYKSHAAGEAARAPTPPPPPAADPVKCARCQKRLDRATWASHWLRHWERDRRPYRCSLCEKSFRDHHQILKHGLTHKWGEDGTGPAPPCPEKRFVCDLCPEGFVYMRYLLAHRARAHPEAVGRALALRCFVCAREFAHLNSLRRHLRAHSGERNFLCNICGKALSSREHLKFHIRIHTGYKPNVCKTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCYVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKNCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCNVMMTCGKGFVKKCNLTLHERVHSGERPHVCPHCGKAFSQRSTLVIHERYHSGARPYVCSLCNRGFVAKGLLSMHLKTTCI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -