Atae031012.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465259.1:5826776-5836042[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.012 1.6 10.7 2.4 1 21 142 162 142 163 0.93 2 17 0.01 1.4 10.9 3.8 1 23 169 191 169 191 0.97 3 17 9.4e-05 0.013 17.3 0.4 1 23 210 232 210 232 0.98 4 17 0.0013 0.17 13.8 2.5 3 20 241 258 239 261 0.92 5 17 1.7e-06 0.00024 22.8 1.0 1 23 267 289 267 289 0.99 6 17 0.28 39 6.4 1.3 2 21 349 368 348 369 0.89 7 17 0.01 1.4 10.9 3.5 1 23 375 397 375 397 0.97 8 17 0.0013 0.18 13.8 0.2 1 23 416 438 416 438 0.98 9 17 0.0013 0.17 13.8 2.5 3 20 447 464 445 467 0.92 10 17 1.3e-05 0.0019 20.0 1.2 1 23 473 495 473 495 0.98 11 17 2.1e-05 0.0029 19.4 5.1 1 23 501 523 501 523 0.97 12 17 0.00011 0.016 17.1 3.2 1 23 529 551 529 551 0.96 13 17 1.8e-05 0.0026 19.5 0.5 1 23 557 579 557 579 0.96 14 17 0.00018 0.025 16.4 0.6 2 23 586 607 585 607 0.96 15 17 5.6e-06 0.00078 21.2 4.0 1 23 613 635 613 635 0.98 16 17 3.7e-06 0.00051 21.8 0.8 1 23 641 663 641 663 0.98 17 17 4e-05 0.0055 18.5 2.8 1 23 669 691 669 691 0.98
Sequence Information
- Coding Sequence
- ATGTATGATATATTTGCAAAAACGCAGGATTCTGTTAGTGTGGCAGACGTCTTGACAATGTATGCTGCTTTGAAGGTTGACAAAGTTGATTCGTTGCCAAAAATAGTATGTCATAGTTGTCACAAccatttaattagtttttataattttcgacAAAATGCTGAAAAAGCCGAGACTACATTAAAGAATCGCATTGAAAGTAATAAGGAAATTTTAATTGATCCTTGTTCACTACAAAATGaacttatacatataaaaagtgAAAACCTAGACATAACTCAagattacaatattttaaacacTGGCTTGGATGctgttaaaaatgaaaaagattgCAAAACAGAATGCAATGAATTTGGGTTAGAAACACAAGATGATGCATTTGACATTAATGATATAGACACAGACCCACAGGAAATCAGTTTCAAATGTATGGTGTGTCACAAAAAGTTTAAAACAGCTACAAGATTTGCACTACATGTGAAAAAGTGCTCAAAACCTGAATACGCTTGTAAAATTTGCCCTAAAAAATTCCAAAAGCATTTAAAGTTTATGAAACATTTACTAAGCCATGGAAAAACTGAACCAGAGATATCTGAAATCAATCAAAATGAGCCAAGTGAAAAATTCGAATGTGGAGTTTGTTCTGTGAACTTCAAGTCTTTTAATTCATTAGCAGCTCATATGCGAAAGCATACAAAGAAAAGCAGAGTTTTGGCTTGTTCAATTTGCGGCaaggtttttaaaaaagtaagtCATGTGAAGCGGCATGAACTGTGTCATGAAGAGAATAGACCATTCAAATGTTCAGTTTGTCCAAAGCGATTTAATACGGAAAGTTTGTTGAACGAACATTTAAACAAGCACAATATAAAAAGTGAAAACCAAGATATAACTCAAGACTTCAATATTTTAAACAATGGCTTAGATGCTGTTAAAGATGGAATAGATTGCAAAACAGAAGGCAATGAATTTGGGTTGGAAACACAAGATGATGTCTTTGATGTCAATGATTTAGACACAGACCCACAGGAAAACAGTTTGAAATGTATGGTGTGCcacaaaaagtttaaaatagcTACAAGATTTGCACAACATGTAAAAAAGTGCTCAAAACCTGAATATGCTTGTACAATTTGCCCCAAAAAATTCCAAAAGCATTTAAAGTTTATGAAACATTTACTAAGCCATGGAAAAACTGAACCAGAGATATCTGAAATTAATCAAAATGAGCCAAGTGAAAAATTCGAATGTGGAGTTTGTTCTGTGAACTTCAAGGCTTTTAATTCATTAGCAGCTCATATGCGAAAGCATACAAAGAAAGGTAGAGTTTTGGCTTGTTCAATTTGCGGCaaggtttttaaaaaagtaagtCATGTGAAGCGGCATGAACTGTGTCATGAGGAGAATAGACCATTCAAATGTTCAGTTTGTCCAAAGCGATTTAATACAGAAAGTTTGTTAAACGAACATTCAAACAAGCACAATAAGATTAAACCTCACTGTTGCCCGATTTGTAATAAATCTTTTGCTCATTTGTCAACATTATCAACACATATAAAAATTCATACGAGAGAGAAGAGGTTTCTATGTCCCACTTGTGGGAAGAACTTTGATTGCAGTACTAATTTGAACCAGCATATGAGAAGGCATATGGGGTTGAAGACTTTTGCTTGCAGCATGTGCCCAAAGAAATTTGTCAGCAAAGGTGAGCTAAAATCTCATACGGTGACTCACACAGGCGAGCGTAAATGGCCATGTTCGCAGTGTAACTCTGCCTTTACCACTAAAGGCTCCTTGAAGTACCATTTGATGAGGCATGCGGGAGTGAGACGGCACCAGTGTGACGTCTGCCCTATGAAattcgTAACTCGCGACCACTTGAAACGTCACTATCGCATTCACACGGGCGAGAAACCTTACAAGTGCGACATGTGTGAACGAGCCTTTACGCAAAGCAACGACCTCATCAAACACAAAAGGGCACATCTCGGAGAAAATGTTTATAAatgcACAGAATGCAGTCAAGGATTCCGCTTGCGATCTGAATTAAGGCACCATATGAATGACCACTATatGGATATACAACAAGAGACTCAAACAGTTGACATAACGACGGTTAAAGGTGAGAGTGCCGAGTCATCAATTAATGATATTCAGGCTGCGGAATCAGTGCAATAG
- Protein Sequence
- MYDIFAKTQDSVSVADVLTMYAALKVDKVDSLPKIVCHSCHNHLISFYNFRQNAEKAETTLKNRIESNKEILIDPCSLQNELIHIKSENLDITQDYNILNTGLDAVKNEKDCKTECNEFGLETQDDAFDINDIDTDPQEISFKCMVCHKKFKTATRFALHVKKCSKPEYACKICPKKFQKHLKFMKHLLSHGKTEPEISEINQNEPSEKFECGVCSVNFKSFNSLAAHMRKHTKKSRVLACSICGKVFKKVSHVKRHELCHEENRPFKCSVCPKRFNTESLLNEHLNKHNIKSENQDITQDFNILNNGLDAVKDGIDCKTEGNEFGLETQDDVFDVNDLDTDPQENSLKCMVCHKKFKIATRFAQHVKKCSKPEYACTICPKKFQKHLKFMKHLLSHGKTEPEISEINQNEPSEKFECGVCSVNFKAFNSLAAHMRKHTKKGRVLACSICGKVFKKVSHVKRHELCHEENRPFKCSVCPKRFNTESLLNEHSNKHNKIKPHCCPICNKSFAHLSTLSTHIKIHTREKRFLCPTCGKNFDCSTNLNQHMRRHMGLKTFACSMCPKKFVSKGELKSHTVTHTGERKWPCSQCNSAFTTKGSLKYHLMRHAGVRRHQCDVCPMKFVTRDHLKRHYRIHTGEKPYKCDMCERAFTQSNDLIKHKRAHLGENVYKCTECSQGFRLRSELRHHMNDHYMDIQQETQTVDITTVKGESAESSINDIQAAESVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -