Atae012209.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465244.1:20545619-20547922[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.8e-06 0.00024 22.8 2.8 1 23 7 30 7 30 0.95 2 19 0.018 2.4 10.2 0.1 2 23 36 58 36 58 0.94 3 19 8.4e-06 0.0012 20.6 0.2 2 23 67 89 67 89 0.97 4 19 1.3e-05 0.0019 20.0 0.7 2 23 98 120 97 120 0.95 5 19 2.1e-05 0.0029 19.4 1.2 2 23 128 150 128 150 0.97 6 19 2.4e-06 0.00033 22.3 1.5 2 23 158 180 157 180 0.97 7 19 1.3e-06 0.00018 23.1 3.3 1 23 187 210 187 210 0.98 8 19 0.00015 0.02 16.7 0.4 1 23 219 242 219 242 0.98 9 19 4.8e-05 0.0066 18.2 1.0 1 23 268 291 268 291 0.98 10 19 0.017 2.3 10.2 1.9 2 21 299 318 298 319 0.93 11 19 0.018 2.5 10.1 0.3 3 23 329 350 328 350 0.96 12 19 0.019 2.7 10.0 5.8 1 23 371 394 371 394 0.96 13 19 8.1e-05 0.011 17.5 1.1 2 23 401 423 400 423 0.96 14 19 7.7e-05 0.011 17.6 2.1 2 23 430 452 429 452 0.94 15 19 0.00028 0.039 15.8 2.2 1 23 458 481 458 481 0.98 16 19 2.5 3.5e+02 3.4 3.6 2 23 489 511 489 511 0.95 17 19 0.0013 0.18 13.7 0.1 1 23 518 541 518 541 0.97 18 19 0.018 2.5 10.1 2.0 1 22 548 569 548 571 0.89 19 19 0.092 13 7.9 2.0 3 23 587 608 586 608 0.90
Sequence Information
- Coding Sequence
- ATGCAGAACCAACTGGAATTCGTATGCGACCACTGCAGTCGCTCTTTCACAAGGAAATATAACTTACAGATTCATATAGAGAATCGGCATAGTATCAATTTTCCTTCATGTGAAATCTGTGGCCTTACTTTCGGGAATACTGCTGGAATGCAGCTTCATTATATTAGAGGTCACAATACACAAAATAAGTCATTTCCAGAATGCGACATATGTGGTCGTACTTTTACCAGAAGGCAAAATATAGTATCCCATATGATCACTGTCCATCTAGGTGGCAACGGACGAGAAATAAGATGCGGATTGTGCTCAAGAGATTTTACGACTCCAAGAAACTTGAATCGACATATGAACCAAATGCACAATCCTGATGTAGATTATCCTGTGTGTAACGAGTGCAAGAAAGTGTTCCGGGGAAAAGAGGCACTCATAAATCATATACAAACATGTCACACAACTAAAAGATATCCAAATAAGTGCTATTATTGTGACAAAACATATGTAAATTCTAGAAACTTAAAAAGACACATTCTTATGAATCACAGCGAAGAGAAGTCAGAGTTCAGATGTGATCTGTGTCCGAAAGTTTACACTTCCAAACACAGCTTACGACGACATACACGTACTATCCACAACATTGTCTCTAACCCGAATGAATTCTACTGTGAAAAATGCGGAAAATGGTTCACCTCAGAACCGGAACTGCGGCAACACGTAAAAACAGAACATTCTTTCAAAACTTTCTACAACTACTGTAAGAAGTCGTTGACGAAACTGATGAATCCCTGCCAATCAACCTCTTTTTACAGCTGCGAGTACTGTAACAAAGCCTTTCAAAGTGTTTATCTCTTGAAAGACCACTTAAAAATGAgccataataaaaattacaaccTTTCTACTTGTAATGTTTGCTTTAAAAAATTTCACACTAAGGAAACACTTCTAGAACACAAGAAAATCTGTCTGCCTCCTTCCAACGTAAACCCTTGCAGTCAATGCGAAAAACTATTCACTGATGTATCAAGTCTTGAATTCCATATCAGAATCTTTCACCCGCAGGCGCAAATCGCGGATTCAAATATAACTTCGACTATTGACGAAATCGAAGGGACTTTTAAATGTGGTTATTGCCACAGAGCGTACTACAGCGATCGGTCTTTAAAACATCATGTAAAACTTAAACACTCAACAAGCGAAGCGATGGAGTGCGAATTTTGTGGAAAAATCTGCAGCAACAAGTATTATCTAGCATCTCATGTTAAAACAGTTCATCCCAATAATTCTTGGTTGAAATGCGATTACTGCGAGAAACAATTCAAGTCTAAGCGCAATATCAGACGTCACATCGAGTACACACACCTCGGGATGCAAAGATACAAATGTGTTGAGTGCGAGACGCTGTTCAAAGAAAAAAGAAGTTTACGTAAACACGTTCGTACAAAACACCCGAACTCCCACGCATTTCCTCAATGTCAGTTTTGTCTCAAAAGGTTTGAGTCCGCTAAATCTTGTAAGATACACCTCAAGTTGTTACACTCCTTTAACATGAACACGTATCCGTGTGACTTATGTTCCGTATCTTTCGGCTCTAAAGCTGCCTTGAGCGTTCATTTAGAAACGAAGCATTTAGACGAAGAGAAGATTTACAAGTGCGAGGAATGCAACGTCGTCTTCAAAGGACAAGAGACGTTTGACAAACACAATGAGCTGTGTCATAGCCACAAGCTTATCAGTTTCAAGCAAAAGAAATTGCTTCCTCGTTGCATCATCTGTATGAAAGATTTTGGTACAAGAAAGACTTTGAAGAGGCATATTAAGAGGTTCCACGAGGAATTCGAAGTTGATGAGTTAGCGAGCTATGGTTCGATGAAACGAGATTTTAATATAGATTGTGAAGATTGCCTCAAAAATTTTAATGACGTTCAGCTTTTCGACGATTATCTTGAGGCGAAATACGATCGGGAGACAGTTGTTTTCGAATGTAACACTTGCTTAAGCTCCTACAACAGTTTTGAATATGCGATACTACATTACAAAACAATAAGCATGTTAAAAGTGTCTAATGGCAAGATGATTTTAAGTGAGCTTTGTGTTGCTGAGATGAGTGAAGACGAAAGTAAAGAAGATATAATGAATTTCGCTATTGAATCAACCGATGAAGTTATGGAACCTGAGAGTACCACTAACGAAGCTTGTGAAGTAGCTGTAAAGACTGAACCAGATGACTATGATGAAAGCAATGAAGATCATCAAGTAAATACTGAATACGAAAATGATTATGATCGTAATATCAAAGTTGAAAATTAA
- Protein Sequence
- MQNQLEFVCDHCSRSFTRKYNLQIHIENRHSINFPSCEICGLTFGNTAGMQLHYIRGHNTQNKSFPECDICGRTFTRRQNIVSHMITVHLGGNGREIRCGLCSRDFTTPRNLNRHMNQMHNPDVDYPVCNECKKVFRGKEALINHIQTCHTTKRYPNKCYYCDKTYVNSRNLKRHILMNHSEEKSEFRCDLCPKVYTSKHSLRRHTRTIHNIVSNPNEFYCEKCGKWFTSEPELRQHVKTEHSFKTFYNYCKKSLTKLMNPCQSTSFYSCEYCNKAFQSVYLLKDHLKMSHNKNYNLSTCNVCFKKFHTKETLLEHKKICLPPSNVNPCSQCEKLFTDVSSLEFHIRIFHPQAQIADSNITSTIDEIEGTFKCGYCHRAYYSDRSLKHHVKLKHSTSEAMECEFCGKICSNKYYLASHVKTVHPNNSWLKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCVECETLFKEKRSLRKHVRTKHPNSHAFPQCQFCLKRFESAKSCKIHLKLLHSFNMNTYPCDLCSVSFGSKAALSVHLETKHLDEEKIYKCEECNVVFKGQETFDKHNELCHSHKLISFKQKKLLPRCIICMKDFGTRKTLKRHIKRFHEEFEVDELASYGSMKRDFNIDCEDCLKNFNDVQLFDDYLEAKYDRETVVFECNTCLSSYNSFEYAILHYKTISMLKVSNGKMILSELCVAEMSEDESKEDIMNFAIESTDEVMEPESTTNEACEVAVKTEPDDYDESNEDHQVNTEYENDYDRNIKVEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -