Atae008017.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465243.1:24290220-24290717[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-10 2.8e-07 31.6 0.3 7 39 18 51 17 57 0.83
Sequence Information
- Coding Sequence
- ATGGAACCACCTGCTAAAAAACCCCGTGGACAGTGGACGTTAGAGCAATCAGAAGCTGCAATAGCTGTTGTGAATGGGAGACAGTTGTCTCAACGTGCAGCAGCCGCGCGATATTCTATTCCTAGAAGAACGTTAGTGAACCATCTTAAATCCGGAAAAGTTGAAAAACAAATAGGTTGCCGCACAATTTTAACTGCAGACCAAGAAAATGATCTTGCTTCGAGGATAATAAGACTTGCAGCTGTGGGCTATTCTTTGACGCCCAAAGTTATACGCCATCAAGCTTATGTGTTTTGTGAACAACACAATATTCcgaataattttaacaaaactaCAAAAAGAGCAGGTAAGGATTGGCTAAAATTATTCTTAAAAGGACACCGAGATATCACAAAAAGAAAAgtgcaaatcttaaatccagGCAGAGCTCAAAAACTAAATAAGAATATTGTAATGCAACATTTTGAAGAATACAAAATAAATCTACGAAGAATTTGA
- Protein Sequence
- MEPPAKKPRGQWTLEQSEAAIAVVNGRQLSQRAAAARYSIPRRTLVNHLKSGKVEKQIGCRTILTADQENDLASRIIRLAAVGYSLTPKVIRHQAYVFCEQHNIPNNFNKTTKRAGKDWLKLFLKGHRDITKRKVQILNPGRAQKLNKNIVMQHFEEYKINLRRI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055352;
- 90% Identity
- -
- 80% Identity
- -