Atae029580.1
Basic Information
- Insect
- Aproaerema taeniolella
- Gene Symbol
- -
- Assembly
- GCA_949987775.1
- Location
- OX465258.1:536559-547028[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.1e-11 4.8e-08 34.0 0.0 4 39 205 241 202 245 0.89 2 4 1.1e-11 6.8e-09 36.7 0.3 2 39 257 294 256 297 0.93 3 4 3.3e-15 2e-12 48.1 0.0 3 45 313 356 311 356 0.95 4 4 3.9e-18 2.3e-15 57.4 0.0 1 43 363 406 363 407 0.96
Sequence Information
- Coding Sequence
- ATGCCCGGACACGGTTTGTCACTAGTAAAATGCGAACCATCATCGGAAGAAGACGACAGTAACTCGCAGTTTGCTAACAGTTACATTAATATCCGGTTGGAATCGACCGAACTCCGTCCAGTCAAATTAGAGTGCTTCGGTCACAACAATGCACCGCCTTCGCACCTTCTGCAGCATTTGCCGGGAACGGTGTTGGAGGAGCTGGCGCCGAGGGGTCCTATCGCCACGCCGGTGTCAGTCAGCGTCAAACAAGAGCCCGCTGCCGCCGCAGCCACCTTTGAGACCCTGGAGTCTGCTCGGGCTGAtgctcTGGCACCGAGGGGTCCTATCGCCATTCCGGTATCAGTCAGCGTCAAACAAGAGCCCGCTGCCACCTTAGAGACCCTCGAGTCTGCTCGAGCTGatgatAGCTCCACCTTGATCGATCGTCACTTGGCGCTGCTAACAGCCAGCGACGTTCCTGACTCCTCAGATTTCACTCCTCTGCTTCAAGTCAAGGATGAGCCACTGTCGGAAGGAGAACAACTCACACAGAGTGGTGATGACACGAGTGACTCTTCCACCCAGCCCGACCATGCTCCCAGAGGCAGCCCCAAGAGTTGGACGCAAAAGGACATGGACAATGCGTTGGAAGCGCTGCGGAGCCACAACATGAGCCTCACTAAGGCCTCAGCGACTTACGGCATCCCATCGACCACGCTGTGGCAACGTGCTCACCGCTTGGGTATTGATACTCCGAAGAAAGAAGGATCGGCCAAGTCCTGGAGTGAAGCTGACTTGAGGCGAGCGCTACACGCTTTGAGGGCTGGGGCCATTTCTGCCAACAAGGCTAGCAAAGCCTACGGCATCCCTAGCAGTACGTTATACAAGATCGCCCGCCGCGAGGGCATCCGTCTGGCGGCGCCCTTCAACGCGGCGCCCACCGCCTGGCGCCGGCAGGACCTGGAGCGCGCGCTGGCCTCCATCCGCGGCGGACACACCAGCGTGCAGCGGGCTGCCACGCAGTTCGGCATACCTACTGGAACCCTATACGGGCGCTGTAAGCGGGAGGGTATCGAGCTGTCCCGGTCCAACCCCACGCCCTGGTCTGAGGACGCCATGGGAGAAGCACTTGAGGCTGTCAGAGTAGGTCAGATGTCTATAAACCAGGCTGCCATACATTACAACCTGCCCTATTCTTCACTATACGGTCGATTCAAACGCTGCAAGTACCAAACTCAGGGCATGCCTCCACAACAAGAACTGCAAAAACCCCCCGAAGCGGACGCCCTGACTTCGGAGCTGTACTACCAACACACCCCCGCGCCCCACCCTCCTGTAGACCACTACCACACGTACGCAGAACACGATACAACGCCGCAGCACTACATGCACACCGACCAGGCTATGTATAACCAGCAGCCGATGTATTACAATCAATGCAATATCGTCAGTTGA
- Protein Sequence
- MPGHGLSLVKCEPSSEEDDSNSQFANSYINIRLESTELRPVKLECFGHNNAPPSHLLQHLPGTVLEELAPRGPIATPVSVSVKQEPAAAAATFETLESARADALAPRGPIAIPVSVSVKQEPAATLETLESARADDSSTLIDRHLALLTASDVPDSSDFTPLLQVKDEPLSEGEQLTQSGDDTSDSSTQPDHAPRGSPKSWTQKDMDNALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRRALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRQDLERALASIRGGHTSVQRAATQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQTQGMPPQQELQKPPEADALTSELYYQHTPAPHPPVDHYHTYAEHDTTPQHYMHTDQAMYNQQPMYYNQCNIVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -