Atur049894.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:1477032-1492836[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0073 0.82 11.9 2.6 1 23 225 247 225 248 0.95 2 20 1.3 1.5e+02 4.8 1.8 1 23 255 277 255 277 0.97 3 20 4.2 4.8e+02 3.2 0.2 1 12 281 292 281 295 0.82 4 20 4.2 4.8e+02 3.2 0.2 1 12 332 343 332 346 0.82 5 20 4.2 4.8e+02 3.2 0.2 1 12 383 394 383 397 0.82 6 20 4.2 4.8e+02 3.2 0.2 1 12 434 445 434 448 0.82 7 20 4.2 4.8e+02 3.2 0.2 1 12 485 496 485 499 0.82 8 20 4.2 4.8e+02 3.2 0.2 1 12 533 544 533 547 0.82 9 20 4.2 4.8e+02 3.2 0.2 1 12 581 592 581 595 0.82 10 20 0.13 14 8.0 3.3 1 23 631 653 631 653 0.96 11 20 0.0022 0.25 13.5 1.3 1 23 658 681 658 681 0.97 12 20 2.4 2.7e+02 3.9 0.1 2 23 687 709 686 709 0.77 13 20 0.28 31 6.9 0.1 3 20 720 737 719 739 0.92 14 20 0.012 1.3 11.2 0.3 3 23 750 771 749 771 0.95 15 20 0.045 5.1 9.4 0.2 2 23 777 799 776 799 0.94 16 20 0.00034 0.039 16.1 2.2 1 23 822 844 822 844 0.98 17 20 2.5e-05 0.0028 19.6 2.6 1 23 850 872 850 872 0.96 18 20 0.0022 0.25 13.5 1.5 3 23 880 900 878 900 0.96 19 20 2.7e-06 0.00031 22.7 1.6 1 23 906 928 906 928 0.97 20 20 6.1e-05 0.0069 18.4 0.8 1 23 934 957 934 957 0.96
Sequence Information
- Coding Sequence
- ATGGGACGGGTTCCCCCAACACGTGTGCGACGTGTGCCGCGTGCTGCTGCGGCGCGCCGCGGACCTGCGCGCGCGCAGTCGGCGGGCGCAGGACCAACTGAAGTTGATATTGCTGCATCACCACTGCGTGAGTACCCCCAGGGCCACCTGTACATACCCAGGGCGATAACGACAGACTTCATCCGCTCAGTGGACCGGCCGGCGGCGGGTCTAAGTCTCCCGATGGTCGTCGCGGCCTGCCCCGGCCCCGTCTACTACCATCATGAAGACTTGATTAAGGAGGAGATCCCCCTCCTGTCCCCTATCGCACCGCTGCTGTCCCCGTCCCCTCCCTCCCCTCCGCCCCCCTCCCCGCCCGCAccctccccctccccctccGCCGCGCTCAGCCCGAAGCTGGAGGACGACTCCAACGACGACGTGGCGCTCAGCGAACTGCAGTACCTCGGGCCGAAGAgggagaagaagaagaaacccGTGAGGAAACTCAAGACgaagaaagtgaaaatggagAAAGCGAAGAAGGAGCGTCGGAAAACGGAGAAGATCCGCGACGAGGACTTCCCCGCGTTCGAGAGGGAGTACAACTTCGAGGTGGTCATACTCTCGCACGAGCAGCAGGTGGACGACTTAGCGGCGCGCAAGGGGAAAGACAACTACATGAATTCCCAGTTCAAATGTGATAAATGCTTTAAAGGATTCTACACGGAGGCCACGCTAGCCAACCACAACGCTAAGCACCATGACGAGAGCGTGGGTCCGCACGTGTGCTCGCTGTGCCTGTGCCGGTTCCGCATCCCCGCCATCCTGCGCCGGCACCTCGCCACGCACCGCCTGCGCTTTGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGCACTGCGGCTTCACCGCCAGGGACAGGTGACcacaatatcatcatcatcatcatcatcatcatcatcatcatccccGCCATCCTGCGCCGGCACCTCGCCACGCACCGCCTGCGCTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGCACTGCGGCTTCACCGCCAGGGACAGGTGACcacaatatcatcatcatcatcatcatcatcatcatcatcatccccGCCATCCTGCGCCGGCACCTCGCCACGCACCGCCTGCGCTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGCACTGCGGCTTCACCGCCAGGGACAGGTGACcacaatatcatcatcatcatcatcatcatcatcatcatcatccccGCCATCCTGCGCCGGCACCTCGCCACGCACCGCCTGCGCTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGCACTGCGGCTTCACCGCCAGGGACAGGTGACcacaatatcatcatcatcatcatcatcatcatcatcatcatccccGCCATCCTGCGCCGGCACCTCGCCACGCACCGTCTGCGCTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGCACTGCGGCTTCACCGCCAGGGACAGGTGACcacaatatcatcatcatcatcatcatcatcatccccGCCATCCTGCGCCGGCACCTCGCCACGCACCGTCTGCGCTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGCACTGCGGCTTCACCGCCAGGGACAGGTGACcacaatatcatcatcatcatcatcatcatcatccccGCCATCCTGCGCCGGCACCTCGCCACGCACCGCCTGCGCTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGCACTGCGGCTTCACCGCCAGGGACAGGTGACcacaatatcatcatcatcatcatcatcatcatcatcatccccGCCATCCTGCGCCGGCACCTCGCCACGCACCGCCTGCGCTTCGTGTGCCAGCACTGCGGCTTCACCGCCAGGGACAGGTCGCACGCGATGACACACTCTAAGGAGCACAAGGGACTACGATACGAGTGCCAGTACTGCGGGGATACCTTTAAGAAACGTTCAACATACGGCACGCACGTGCGCATCCAGCACCCGAACGAGAACAAGTCGTGCGACGTGTGCGGGGAGACCTTCCTCGGGGCCCTCGGGCTCGCGCTGCACAAGAAGAAGTCGCATCGACAGACTGTGGAGACCGGCGTGGCTCACTGTGAGATTTGCGGAGTGCGGTTTGAGAGCGAGTATGCGCGTGCGCGGCACCTGACACTCGCTGTTAAAGGCTGTCAACACACTAGGGCGTGTTCGCTGTGCGGTGAGAACTTCAAGGATGACGAGGCGCTACACGAACACGTGCGCGAGCGGCACAGACAGCGCGAGACGCAGTGCCAGGAGTGTGACATGACGTTCGCGAGCGAAGCGTCCCGGAGCGTGCATTACGAGCGCGTACATCTGAAGGTGAAGGTGCGGCGCTGTCTGCCCAAGACGGGAAGAAAATACGACAGATACGGTGACCACTTCATGTGCGAGATGTGCGGGAAAAAGTGTCAGAACAACATCGCGCTGAAGTATCACATTCGATCTCACACCGGGGAGAAGCCGCACGCCTGCCCGCACTGCCCCAAGCACTACTCCACACCCGTCGCATTGCAGTACCACATCCGCTCGCACACGGGTGACAAGCCGCTGGCGTGCCCGCACTGCCCGCTGCGGTACGCCACCCACAAAGGATTGCagACGCACCTGCTGAAGCACACGGGCGAGAGGCCGTTCAAGTGCGAGTTGTGCGGGAAAGCCTTCACACAGAAGACTATGCTGCAGAAACACAAGactGTCCACACAGGGGAGAAGCCGTTCTCGTGCGAGATTTGCGGCAAGGCGTTCACGCAGTCGGGTTCCGTGCACACGCACGTGAAGTACGTGCACAAGAAGCTGCCCGCGCCGCCACGGAACCGCGGCAAGCGGGAGAAACCCGACTGA
- Protein Sequence
- MGRVPPTRVRRVPRAAAARRGPARAQSAGAGPTEVDIAASPLREYPQGHLYIPRAITTDFIRSVDRPAAGLSLPMVVAACPGPVYYHHEDLIKEEIPLLSPIAPLLSPSPPSPPPPSPPAPSPSPSAALSPKLEDDSNDDVALSELQYLGPKREKKKKPVRKLKTKKVKMEKAKKERRKTEKIRDEDFPAFEREYNFEVVILSHEQQVDDLAARKGKDNYMNSQFKCDKCFKGFYTEATLANHNAKHHDESVGPHVCSLCLCRFRIPAILRRHLATHRLRFVCQHCGFTARDSTAASPPGTGDHNIIIIIIIIIIIIPAILRRHLATHRLRFVCQHCGFTARDSTAASPPGTGDHNIIIIIIIIIIIIPAILRRHLATHRLRFVCQHCGFTARDSTAASPPGTGDHNIIIIIIIIIIIIPAILRRHLATHRLRFVCQHCGFTARDSTAASPPGTGDHNIIIIIIIIIIIIPAILRRHLATHRLRFVCQHCGFTARDSTAASPPGTGDHNIIIIIIIIIPAILRRHLATHRLRFVCQHCGFTARDSTAASPPGTGDHNIIIIIIIIIPAILRRHLATHRLRFVCQHCGFTARDSTAASPPGTGDHNIIIIIIIIIIIPAILRRHLATHRLRFVCQHCGFTARDRSHAMTHSKEHKGLRYECQYCGDTFKKRSTYGTHVRIQHPNENKSCDVCGETFLGALGLALHKKKSHRQTVETGVAHCEICGVRFESEYARARHLTLAVKGCQHTRACSLCGENFKDDEALHEHVRERHRQRETQCQECDMTFASEASRSVHYERVHLKVKVRRCLPKTGRKYDRYGDHFMCEMCGKKCQNNIALKYHIRSHTGEKPHACPHCPKHYSTPVALQYHIRSHTGDKPLACPHCPLRYATHKGLQTHLLKHTGERPFKCELCGKAFTQKTMLQKHKTVHTGEKPFSCEICGKAFTQSGSVHTHVKYVHKKLPAPPRNRGKREKPD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -