Atur050595.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- znf711
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:7945366-7975846[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.011 1.2 11.3 2.2 1 23 1073 1095 1073 1095 0.98 2 10 0.14 16 7.9 3.7 2 23 1103 1124 1103 1124 0.97 3 10 2.4 2.7e+02 4.0 4.5 1 23 1157 1179 1157 1179 0.97 4 10 1.7e-05 0.0019 20.2 1.5 2 23 1184 1205 1183 1205 0.96 5 10 0.008 0.9 11.8 1.6 1 23 1211 1233 1211 1233 0.97 6 10 0.038 4.3 9.6 1.5 2 21 1240 1259 1239 1264 0.92 7 10 0.14 16 7.8 0.2 1 19 1272 1290 1272 1295 0.80 8 10 0.029 3.3 10.0 0.4 2 23 1302 1326 1301 1326 0.94 9 10 7.5e-06 0.00085 21.3 1.5 1 23 1335 1357 1335 1357 0.98 10 10 0.5 56 6.1 1.7 1 23 1363 1386 1363 1386 0.93
Sequence Information
- Coding Sequence
- ATGAATCGAGTGAAGAAACACAGAATTAAAGAAGAGAAAGCAACGACTTCTCGTACATTGGAGGACCACGATTTGGCGTATTTTATCCATGATCGAGTGGAGTTGATGCACCAAGTTTTTTCTGTTTTAAAATCGAAAGAACTGAAATCATTGGCCCCTGAGTGTGTTAGGCGGCTTTCTATAGATGATTTGCAGGAATTATGTCTGGAGGAAcTCCTTGGCATAAGTTCAAAGCGCCTCTGTGCCATCCTCGATGGTGCGGAGCCTCCGTCAGACACAGACTCGTCCAGCCAGTCAGCCGAGCAGATGGAGACAATCTCTCTTGACAGCATATCCTCGGACGAGGAGATACTCAGTCAGAGTAGCAAAAAGAAAAAGCACAAGCACCGGCATTCAAAGAAGAAACGCCGGAAGAAGTCCAAGGGCTCTGACGAGGAGCAGGGCGAGAGCCGCGCCTCCCGCGCCGGCCTGACTGTTCTGGAACTGCTGGAGCTGCAGGCGCGCGCGAGGGCCATCAGGGCGCAGCTGCACCAGGAGCCTGCGAAGGTGCAAGAGCCGGCGGGCGAGGCGCCGTCTTCAGACAATGACGAGGTGCTGATCAAGGAAGAGCCGGCCGAGGTGGTGGAAATCAGCAGCGATGAGGAGAAGCCTGACGTGGCCCGGCTGCAGAAGCAAATAGAAGCGTCAACGTCTCAATCCAACGCAACAGATACTAACAAAAATGGCGACTCGCAGTCGGTGACTAAAAGAATTAACGATTTGATAATAACAGTCCCGCAGTCCAAACCGACGAGGAAAATTAAGCTCAAACGGCAAAAACCAACAGAAACTGTTACAAGAGAAAAAACACCTGAGAAAGTTGTGAAAGAACAGGTTGTTGAGACTGTTAATACTGTCAATAGTACTGTTACTACCAGTACTAATATAACTAGTAAAAAGGAAACTGTAAAGGTGAATGCAGTTGAAGTTAAGAACAAAAGTAAGAAGGGtaagaagaaaaagaaaaaggcAAAGGAAAAGAGAGGCAGTGATGAAGATGAAATTACGATTCAACTATCAGATAGTGAGAAAATGGATTTACTTGAAGATTtagatgcaaagaatttggatACTGTTACATCCAGTGATTCTGATAGTTCGGATGACGGAGATAATGATGGAAAAGAAGCGAATGTGGAAAAGGTAGTCAATTCAGGAAATAAAGCTTTGATTAATTTGGATAATAAAGTGGATAATGTAGATAATAACAAAGTTAATTCAAAGACTAACACCGAATCTGCTGAAATAAATACAGCAGTTACAGAAAACGTTGAGATTAAAGAACAGGTACAAAAAGATGATGGAATAAGAGGTTATATATCGAAAGATGATGAAGCTACTATTGAAATTAATGATCTGCCTATTGTTACTGATGAATGTATTGACTCGAAGGTTGGTGATAAACAAATTGATGCAAAATGCGATGTGAGCGATGAGCTAGTTGAACGTACAGATGATAAAAAAACAGATAAACCCGCTAGTAATGTAGAAGAAAAGAGCGACAAGCCGGGAAGTTCATCGTGTCAAGATACCAAATCAGATGGTGAAATATCTGATAGAGAGAGTTCTGAAGTTGAAGCTTCGGATGCACAGAATGAAGTAGTGTGTATATCCGATGATGACaacaagaaaaagaagaaaaagaaaaaagaaaagaaaaaatctaagaaaaataaaacaaagtcgggTTTTCGTGAGAAACATGATGAGAATttttataaagaaaaagaaGTTGAAGGGAATCCTACCATCGTCACGGAAACCAtcgataatgatgatgatgtttatgAATACCTGGAAATTTCCGATGATTCGTCATGTTACGAAGTTGAAGGTGTATCGGTTTTGTCTAAAGAACCCACTGCAGAAGAGATTGAGGCTTTCTCTGCAAGAATGGATGAGATTGACATAGATAGAGTTGAGACAATTGTAGTTAGTGAAGACTCGCCCGCGGAATTGAATGAAGCTAGTGATATAGAGAACATATCGTGGAAAGACAGATATCTAGGTAGCAAAAAGGTTAAAAGAGTTTTGACAACATCGAACATACTTAATgctatcagaaaaaaaaatagagaacTCAAAAAGAAGTTGGAAGAAGCTAAAAAGGCGGAAAAAGAGAAAGAAGTAGATGTAGAAAAAGCAAGCAGCCGAACATTTGAAGACGGGTCCATTGAACAGTATGAAACTCTGCAAGCTTCTACAAAATATGTCGATCCTGTTAAGGAACCAGAAGTTGCAAATATAAGCAAGGACGGAGAAGAGACTACAAGCAAAGAAGGAGATGAGAATACAAGCAAGGATGGAGAAAATATAGAATCTAAAGAAGACACAGGCGAAAACGTCACTAAAGAGATGAAAAAGGATGCCAAAATGTTGCTTAAAATGTACAAACGTTTGCTCAAATACAATGATATCTCAAAACAGAAagatcctaataaaaaaaagaagaagaaacaCAAGAAAAGCAAGGATACGGATAAAGTGGTTTCAAATGATCATGTGAACCCACAGCTGCTGCTCTGTTGGGAATGCACCGCTATAATTAGGACTGTGATACACTTTAAGAGACAGGTCCGCACAGCTCACGACTGTCTGGTCCGGTATATGACTAAACCAACCTTTTATTCTGAAACTGAAAATAATACAGCTGAAATTAATACTAACAAAAATTTAGAGATTACTAAGGATAATAGAAATGAAAACGAGTCTCGAACGCTTTTCATAAAAATTGAAGACAATGATTATGTTTATGAGTTAAGTGAAAACTTTTATGAAGATGAGAATAATAGCTCTGCAGACGATAAGGAGGACATGAATCAAATTAAAACAGACCACGGTACAGTCCCACAGGAGACTGTTACGAGTAAAAAGACAAAAAGTAAGAAGAGAAAGCGTAAGAAAGAAGATTTTGACGCATCCGACGACGAACCGCTCAAGCCCAGCAAGAAGGAGAGGAAAGGCGAACGGAAGGAAGAAAGAGAGGATATATCTGTGAAGAAGCGTCGCAGCAAACGGGAGAAGCCGGCCGGAGTAGTCACCAACCCGCGGGTGAACCGCAACTTGGAGCAACTCAATGTTAAAGACGGACAGATTGAGATGGTAGTCCTAAGTTGGGAGGagGTGGAAGCAGAGAGGCAGCGAGCTCGCGAGAGCGTCGTGTTTACGAGGCATGAGTACCGGTGCTCGGACTGCGTGCTCGGGTTCAACCACCGGTTCAAACTAGACAACCACATGGCCAAGCATGATCCTTCAGCCGGGGCAGCAGAGTGTCCGGTGTGTCACGTGCGATGTCGGGACGATCATGCTTTGGTAGCGCACAAACGGAGACACCGTGTCAGATGGCGGTGTGTCGAATGCGGCGAGCTGTCGtcgcgcgcggcggtggcggccgaccacgctgcgcgcgcgcacggcGCCGCGCCCACGCACACTTGTCGTCGCTGCGGCCTCACACACGAATCCCTGGCAAAACTGCGTAACCATATGAAGAATCACGCGGAGCGACAGAAATGCGAACTCTGCGGGAAAACATTCCGAGACCGCACCTCGTTGCGTACACATCTGTTTATCCATCGCGGTGAGAAGGAGTACTCGTGCCCACATTGTGACAAGAGGTTTCTCTTCAAGAAGGCGATGGAAGTGCATCTAGTGACGCACGCCGCGCCCGCGCAGCTCTACTGTCTCGagTGCGACATGACGTTTAAGAATCGGATGTCCTACTACCAGCACCAGAAATACAACTTGAAGCACATCGATCCTGCGAAACTAAAGTACCAATGTCCGTTATGCGACAAAAAGTTCTTGAAGGCGGCGCGATTGGAGGAGCACAACTTTGCGGTCCATCTCAAGGTGACCCCCATCCGGTGCACCATGCCGGACTGCGATTTCGCGTGTTCTTCGCGGCCGGTACTGCGCACGCACATCCGAATGGTGCACCGCAACCTGCGCGCGGCGCGCAACCATGTCTGCGACACCTGCGGGAAGGCCTATACGACTAAGAAGACTCTGGAAGGTCATATGAGGAGTCACACAGGGGAACGTCCATTCCATTGCTCGCTATGTTCCTCCACATTCTCATACGAAGCAGCATTGTACAACCATAACAAGCTGGTCCATCTCAAGGGCAAGACCGATTTATCTTGCGCTCCCCAGGCGCCACGAAGAGCGGGCTGGACGTCGGCGCAGGCCCCCGGCGCGCACGTCGTATGA
- Protein Sequence
- MNRVKKHRIKEEKATTSRTLEDHDLAYFIHDRVELMHQVFSVLKSKELKSLAPECVRRLSIDDLQELCLEELLGISSKRLCAILDGAEPPSDTDSSSQSAEQMETISLDSISSDEEILSQSSKKKKHKHRHSKKKRRKKSKGSDEEQGESRASRAGLTVLELLELQARARAIRAQLHQEPAKVQEPAGEAPSSDNDEVLIKEEPAEVVEISSDEEKPDVARLQKQIEASTSQSNATDTNKNGDSQSVTKRINDLIITVPQSKPTRKIKLKRQKPTETVTREKTPEKVVKEQVVETVNTVNSTVTTSTNITSKKETVKVNAVEVKNKSKKGKKKKKKAKEKRGSDEDEITIQLSDSEKMDLLEDLDAKNLDTVTSSDSDSSDDGDNDGKEANVEKVVNSGNKALINLDNKVDNVDNNKVNSKTNTESAEINTAVTENVEIKEQVQKDDGIRGYISKDDEATIEINDLPIVTDECIDSKVGDKQIDAKCDVSDELVERTDDKKTDKPASNVEEKSDKPGSSSCQDTKSDGEISDRESSEVEASDAQNEVVCISDDDNKKKKKKKKEKKKSKKNKTKSGFREKHDENFYKEKEVEGNPTIVTETIDNDDDVYEYLEISDDSSCYEVEGVSVLSKEPTAEEIEAFSARMDEIDIDRVETIVVSEDSPAELNEASDIENISWKDRYLGSKKVKRVLTTSNILNAIRKKNRELKKKLEEAKKAEKEKEVDVEKASSRTFEDGSIEQYETLQASTKYVDPVKEPEVANISKDGEETTSKEGDENTSKDGENIESKEDTGENVTKEMKKDAKMLLKMYKRLLKYNDISKQKDPNKKKKKKHKKSKDTDKVVSNDHVNPQLLLCWECTAIIRTVIHFKRQVRTAHDCLVRYMTKPTFYSETENNTAEINTNKNLEITKDNRNENESRTLFIKIEDNDYVYELSENFYEDENNSSADDKEDMNQIKTDHGTVPQETVTSKKTKSKKRKRKKEDFDASDDEPLKPSKKERKGERKEEREDISVKKRRSKREKPAGVVTNPRVNRNLEQLNVKDGQIEMVVLSWEEVEAERQRARESVVFTRHEYRCSDCVLGFNHRFKLDNHMAKHDPSAGAAECPVCHVRCRDDHALVAHKRRHRVRWRCVECGELSSRAAVAADHAARAHGAAPTHTCRRCGLTHESLAKLRNHMKNHAERQKCELCGKTFRDRTSLRTHLFIHRGEKEYSCPHCDKRFLFKKAMEVHLVTHAAPAQLYCLECDMTFKNRMSYYQHQKYNLKHIDPAKLKYQCPLCDKKFLKAARLEEHNFAVHLKVTPIRCTMPDCDFACSSRPVLRTHIRMVHRNLRAARNHVCDTCGKAYTTKKTLEGHMRSHTGERPFHCSLCSSTFSYEAALYNHNKLVHLKGKTDLSCAPQAPRRAGWTSAQAPGAHVV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -