Atur050752.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- ZFY
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:10115745-10125486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.8 7.7e+02 2.5 0.4 6 23 235 253 230 253 0.76 2 11 0.00039 0.044 15.9 1.3 1 23 260 282 260 282 0.98 3 11 0.71 80 5.6 3.1 2 23 287 308 287 309 0.93 4 11 1.4 1.6e+02 4.7 1.5 2 23 313 335 312 335 0.92 5 11 0.0054 0.61 12.3 1.5 1 23 338 360 338 360 0.97 6 11 3.2e-05 0.0036 19.3 1.9 1 23 363 386 363 386 0.97 7 11 0.013 1.5 11.1 0.5 2 21 395 414 394 415 0.93 8 11 0.0013 0.15 14.2 1.9 1 23 432 455 432 455 0.97 9 11 0.59 67 5.9 4.6 1 23 461 484 461 484 0.93 10 11 4.1e-05 0.0046 19.0 0.2 3 23 495 515 494 515 0.99 11 11 0.00045 0.051 15.7 1.1 1 23 521 544 521 544 0.95
Sequence Information
- Coding Sequence
- ATGGAGACTATCGGCGTTAAAAATGAATTCTTCACGGACTACAGAACCACATCTTACTGCCACGCATGTCTTAGCACGGACAGGGTGCTCTCAACTATGACCGAAtatatcgatatttattacaaaatttgCGATTATCAGAACGTGAACCCTCCAACGGAGACATACTTGTGTTGGGAGTGCACAGCGTTGCTGAAGAGACTAAAGATGTTCACGAAAAAGGTAGCAGAAGCTCAGAGAATGCttaaattttatagtacaaataaACAgGATTTCCCACACTCATTATCAAACCTTACCACACATAACACCACTaataacaatgaaataaaactgACACATGAAGAAGAAGAATTAAAACCTATAAAAATAGAAACGGAACAATTGGATGATGAATTTGATACTTTTGATTATACAATCAAAGTCGAACCGGATGACGAACCATCAGAACTtgctaatattaatattatagaaaCAAAGGATATTCCGGAGATTTCGGAGCCATCAAAATCTGATTGGAAAGAGTTTAATATGAAAAGAATTATGAATAGAAAAGCGAAGTACAGATTTGTAAATGTTAAGTTAAAAAAGCACAGACGATTGTTAATAAGGAAGATACCGATTAAGAGGAATGAAGTTTTGTCCGGTTTGGAAGAGGAAAGGTgcagtttatttatgaaggaGGAGTATAAGTGTATGTGTTGTGTTGCGGTGTGGAATGACAAAGATGGGCTCGAAAAACATAATAGGACATGGCATGAGGAGGTTAATGGCTCCTACCAATGCAACATCTGCCAAATCCGTTGCCCGTCTCAGGATAAACTGCAAGCCCACGAAAGCAAGCACTACTACCGGAGGGAATGCAAGGTGTGCCGGATCCGGTACTGCTCGCAGAGCGTCATGGACAGACATTTGGAGGAGCACCATCGTATGGTGCAGTGTTTGGCTTGTGAGCTGTGTTTTAAGAATGTACGCCTGTTCTACACACACTACAAGGCACTTCACGGCAGCTTTGTGTGTGACGTGTGCGGCAAGCGGTGCAAGTCTCGAGCCATCATAGAGAAACATCTCAGATACCATTTCGGCTACGAATGTCCGTATTGTAAGAAAAAACTAAAGAACTCATCCTCCTACAAGAACCACGTGGAAACCCAGCACGCGTCTTCCGTCTCAGACAACTCGTACTGCGTGCAGTGCGACAGAAGATTCACCAGCGACCGGATGTACAAGCGGCACTTGCAGGCCAGCGCGGCGCATGCGCGAGAGAGGGACAACACTATGGCTAAACGGAAGTACCCCTGTCCAGAATGCAGCAATGTATACTCCCGCCGAACCTACATGAACAACCACTACCGCCACGTGCACTCCAAACAGAGCAAGTACTATTGTGAGGATTGCGATCGGCACTTTTTGAACCGCACTCGGTTCCTGGACCACCGACGTTTCCAGCATGAGGGCGCGAAGAGAGACAAGGACAAACTGTGTAACATATGCGGGAGAGGATTTGCGGCCAACAGAACGTTGATAAACCATATCAGAACTCATTCGGGCGAGCGGCCGTTCGCGTGCGAGTACTGCGGGGCCAAGTTCACGCAGAAACATGCTATGTTGAGCCATGTCAAGTACATACACTTGAAGAGCAAGCGCAAGTCGAGCTGGCACGAGTAG
- Protein Sequence
- METIGVKNEFFTDYRTTSYCHACLSTDRVLSTMTEYIDIYYKICDYQNVNPPTETYLCWECTALLKRLKMFTKKVAEAQRMLKFYSTNKQDFPHSLSNLTTHNTTNNNEIKLTHEEEELKPIKIETEQLDDEFDTFDYTIKVEPDDEPSELANINIIETKDIPEISEPSKSDWKEFNMKRIMNRKAKYRFVNVKLKKHRRLLIRKIPIKRNEVLSGLEEERCSLFMKEEYKCMCCVAVWNDKDGLEKHNRTWHEEVNGSYQCNICQIRCPSQDKLQAHESKHYYRRECKVCRIRYCSQSVMDRHLEEHHRMVQCLACELCFKNVRLFYTHYKALHGSFVCDVCGKRCKSRAIIEKHLRYHFGYECPYCKKKLKNSSSYKNHVETQHASSVSDNSYCVQCDRRFTSDRMYKRHLQASAAHARERDNTMAKRKYPCPECSNVYSRRTYMNNHYRHVHSKQSKYYCEDCDRHFLNRTRFLDHRRFQHEGAKRDKDKLCNICGRGFAANRTLINHIRTHSGERPFACEYCGAKFTQKHAMLSHVKYIHLKSKRKSSWHE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00773291;
- 90% Identity
- -
- 80% Identity
- -