Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990280.1:58962480-58967495[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.56 63 5.9 0.2 1 20 155 174 155 176 0.88

2 8 1.2e-06 0.00014 23.7 1.2 1 23 183 205 183 205 0.97

3 8 0.0024 0.27 13.4 1.1 6 23 215 232 213 232 0.98

4 8 0.37 42 6.5 7.2 1 23 238 260 238 260 0.92

5 8 2.2e-06 0.00025 22.9 0.4 3 23 268 288 266 288 0.95

6 8 4.7 5.3e+02 3.0 0.1 13 23 305 315 298 315 0.77

7 8 0.0019 0.21 13.7 0.9 6 23 324 341 324 341 0.99

8 8 0.058 6.5 9.0 0.0 1 23 347 372 347 372 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.56	63	5.9	0.2	1	20	155	174	155	176	0.88
2	8	1.2e-06	0.00014	23.7	1.2	1	23	183	205	183	205	0.97
3	8	0.0024	0.27	13.4	1.1	6	23	215	232	213	232	0.98
4	8	0.37	42	6.5	7.2	1	23	238	260	238	260	0.92
5	8	2.2e-06	0.00025	22.9	0.4	3	23	268	288	266	288	0.95
6	8	4.7	5.3e+02	3.0	0.1	13	23	305	315	298	315	0.77
7	8	0.0019	0.21	13.7	0.9	6	23	324	341	324	341	0.99
8	8	0.058	6.5	9.0	0.0	1	23	347	372	347	372	0.97

Sequence Information

Coding Sequence: ATGGATACATCTCGCTTGTGCCGCAGCTGCATGAAAGAAGTAGCGTCGTGGGAGCGCGAAAACTTCGACCAACGAATAATTCACATGTTCAGTTATTGCACCAATGTTCAGATAACCGAAAATGACTTACTACCAAAGCAATTTTGCTACGACTGCACAATTAAGATTGAATCATCATTTACTTATGTTAAGGAAGCTCAACACACGAATGAATATCTCACAAATCTTCTGACTCAACGCACTATAATAGTTGACCCAACGAAGCATACTGAACTCCCTCATGATAACAATGAAGACCTTATATTTGAAGACGAACCTATAGATGAAATCACACCTGAAATTGCAAATGACCACATAGAAACATCAGTGATCGAGTCAGTTACAAGCATGATATATGCTACGGAGGGTGTAATTAAAACACCAGTTAAAGCGTCAAAAGAAAAATCTATATCGGatcaaaaatatgtatgcaTGGTATGCAAAAAGATATTCCTCTCAAAGGTTTGGTTTGACAAGCACGTGAGCAGCCAGAAATGCAGGAGTGTGTATAAATGCACACAGTGTTCCAAGACATTCAAGCGGCCATCACAATTATCTGTACACGCGGTGACACACTCAGCGGAGCGCCGCTACGTGTGCTCGTGCGGGAAGCGGTACAAGCGCCGCAAGGACCTCGTTGTACACGCGAAGACACACTCCGCCGACCGCCCGTACCAGTGTGACCACTGCCACATGAGTTTCAAGTTGAGGAGTGTTCTGAAATGCCATCTCACGCTTCACGAGCCCAACAAGCCGCATCTCTGCTATGTGTGTGGCTGGAGCTTTAAACAAGCGGGTAACCTCTCGGTCCACATGCGCGCGCACACCGGCCTGAAGCCGCACGCGTGTCCCTGCGGCTACAGCGGCGCGTGCGCGGCGTCCCTGCGCCGCCACCAGGCGCGGCACCGCCCCCGGGCCCTCCGCTGCCCCTGCGGCAAGGCGTTCCATGATAAAGCGGCCCTGACGCGGCACTCCCGCTCCCACACCGGCGCGCGGCCCTACCGCTGCCCGGCACCAGGGTGCGCCCGCGGCTTCGTTGACAGCTGGAAGCGCAAGCTGCACCTCATGCGAGCGCACAAGGTGCCGATGTCGCGCATCCCGCGCATGAGAACGGACCCCGCCATAATCTTACCGACTTAG
Protein Sequence: MDTSRLCRSCMKEVASWERENFDQRIIHMFSYCTNVQITENDLLPKQFCYDCTIKIESSFTYVKEAQHTNEYLTNLLTQRTIIVDPTKHTELPHDNNEDLIFEDEPIDEITPEIANDHIETSVIESVTSMIYATEGVIKTPVKASKEKSISDQKYVCMVCKKIFLSKVWFDKHVSSQKCRSVYKCTQCSKTFKRPSQLSVHAVTHSAERRYVCSCGKRYKRRKDLVVHAKTHSADRPYQCDHCHMSFKLRSVLKCHLTLHEPNKPHLCYVCGWSFKQAGNLSVHMRAHTGLKPHACPCGYSGACAASLRRHQARHRPRALRCPCGKAFHDKAALTRHSRSHTGARPYRCPAPGCARGFVDSWKRKLHLMRAHKVPMSRIPRMRTDPAIILPT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00148807;
90% Identity: iTF_00148807;
80% Identity: -