Basic Information

Insect: Apotomis turbidana
Gene Symbol: RREB1
Assembly: GCA_905147355.1
Location: LR990300.1:10705454-10724866[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.045 5.1 9.4 1.0 1 23 94 117 94 117 0.91

2 12 9.6 1.1e+03 2.1 0.7 1 11 158 168 158 179 0.82

3 12 0.032 3.6 9.8 0.1 1 23 308 330 308 330 0.97

4 12 0.0017 0.2 13.8 0.4 1 23 339 361 339 361 0.99

5 12 0.0011 0.12 14.5 2.0 1 23 367 390 367 390 0.97

6 12 0.0043 0.49 12.6 1.6 1 23 738 761 738 761 0.96

7 12 0.00036 0.041 16.0 1.3 2 23 955 976 954 976 0.97

8 12 0.037 4.2 9.7 5.3 1 23 982 1005 982 1005 0.97

9 12 0.13 15 8.0 1.3 1 23 1036 1060 1036 1060 0.91

10 12 0.02 2.3 10.5 0.2 1 23 1084 1107 1084 1107 0.97

11 12 0.0027 0.3 13.3 0.2 2 23 1147 1168 1146 1168 0.96

12 12 0.041 4.6 9.5 5.3 1 23 1174 1196 1174 1196 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.045	5.1	9.4	1.0	1	23	94	117	94	117	0.91
2	12	9.6	1.1e+03	2.1	0.7	1	11	158	168	158	179	0.82
3	12	0.032	3.6	9.8	0.1	1	23	308	330	308	330	0.97
4	12	0.0017	0.2	13.8	0.4	1	23	339	361	339	361	0.99
5	12	0.0011	0.12	14.5	2.0	1	23	367	390	367	390	0.97
6	12	0.0043	0.49	12.6	1.6	1	23	738	761	738	761	0.96
7	12	0.00036	0.041	16.0	1.3	2	23	955	976	954	976	0.97
8	12	0.037	4.2	9.7	5.3	1	23	982	1005	982	1005	0.97
9	12	0.13	15	8.0	1.3	1	23	1036	1060	1036	1060	0.91
10	12	0.02	2.3	10.5	0.2	1	23	1084	1107	1084	1107	0.97
11	12	0.0027	0.3	13.3	0.2	2	23	1147	1168	1146	1168	0.96
12	12	0.041	4.6	9.5	5.3	1	23	1174	1196	1174	1196	0.97

Sequence Information

Coding Sequence: ATGCAGGGAGCCGCAAATGCGCCCGCGGCGCCAGCGGCCGAGCCGCCCCCGTCACAACAAATCAAAACAGAGGACGTCATCAGCGAGGCGAAGGTCGAAACGAACGAAGAAATGGAAGAAATGAGGGTGGAGAAGCAGGAACCTAGAGTAACAAGAACTACGAGCATTGACAGCGATAATCGCTCGGACAGAAGCGAAGAGGAAGACTCTAGAAGAGCGCGCAAACGAGCGGCATCCACTTCCCCATCTCCAATGCCGCTGGATAAGAGATTCGCGCGTTACGAATGCCCAAAATGCGGCCACCGTTTCGACTCGGGCAACGCGTTCGATCTCCACCGCTTCACCGCCCACGGCGACGAAACCCGCGGCTTCAACGATCTCACATTCGTCGATTTCTCCAGCAAGAAATTCCCTGAAATAGCAAGAGGCGTCTGCGAAAGAAACCCCCACGTGTCTATCACAGAACAGAGGTTCAGATGCCAGATATGCTCTAGAGACTTTCCCTGTGGCCAGGCCTTGGATATTCACAGGAAAACTTGCGCCAATCCTACAAGGGTGCAAAGCCCTGAACGCGTAGATCGCAGGGAAGATTTCTTCGCGAAACTTGACTTGAGAAACAGGTCCTATGGCATTCCTGGTACTTTAACGCCACCTATGGAGCGCTTCACGCCTAAATTTGAAGATTCACACTTTACGGGCAATGGTATCCGTCATATTGACGCCGCGAGAGACTTGGCTGACATTCAGTCTATCTTAAACGTAACGTCGACCGGAAGCCTCCTAGAAAGACTCACTGGTACTAGAGTGCCGTTGGAAAGCTCTGTTTTGACCCCACCAGATACCATCGGTAAAGAGAGGGAGCAAGAGGAAACGCAAGACAACTTTGCGGCTGAATTCAGACGAATGAAGCTCCGTGGTGAGTTCCCATGCAGATTATGCCCCGCAAAATTCCCTAATCTTAGGGCTCTGAAAGGACATAACCGAGTTCATCTCAGCGGAACGGGACCTGGGCCCTATCAGTGTAACATGTGCCCTCACGCGTCGCTAGATAAGGCAGCTTTGGTAAGACATATGAGAACACACAACGGCGACCGCCCCTACGAATGTGCTGTCTGCAACTACGCTTTCACCACTAAAGCCAACTGCGAACGGCATCTCAGGAATCGCCACGCCAAAGTCACAAGGGAAGACGTTAAACGTTCAATCATTTACCACCCCTCGGAAGATCCTAACAACGACGAAGTTAACTCTAAGCTGGCGCGTGACGAAGTGAAGAGATCTCTAGCGTTCCACACACCTGAACCTGAAAGGCGTGTTGAACCCACCGGCCGCGAAACTCCACTGTCTCACTTCACGCCTAACTTCATTACCGATAGACACCCAGTAGCATCGTTGACCCCCAAGCCTTTGGCAGATCTCCCCATCCCCATCATACCCAGAGAGCCTGAGACGCCTACACCTAGGATTAAAGTTAAAGGCATCGGGCAGCTAACTCAAATACCCGAATACAGGCCACCTGAATTCCCGATTAAAAATGACGATGACATGGAGACTTATGATGAAGAAACGCCAGTGGATCTCAGCACCAACGACAACTGTGACGTCCTTGATCTCAGCAAAAAGAAACGTGATGTTGAAGAGGATGACGAGCCCAAATCCAAGCCACGGCCGGCGTTCGAGCCCGATGTAGCCGCAGTCGCCGCTTCTAATTTCGAGAAGACTCAATTCCTTTTAGCCCAGCAGAGACTATTTGAGACTTCACTTCCCAAAATCGATCCTTCATATTACGCCACCCAACTATCGCAACTGTACGCCGGGGCCGTCCCAGGCCTACCGGGTCTACCAGGTCTCCCACCTTCCTTTCCTATCAACCCGTACTTTCTTCAACCCTCTTTTTTTCCCCACCCATCTGATTCCCAAGAGCTGGCCGAAATAAAACAGCGCATCCAGAAAGAAATCATTCGTGGACTTAGTATGTCTGGTGGACGGCTTGTGACCGGCGAACAGGAGGCTCAACCTAAACTGGAGCCCGAAGAAGATGACCAGCCTATTCTACGGGATAGCTCGCCGGTTCCGCCTCCCCGTTCTGAATCTCCCCCGCGACCGCTGAACAACAGCCTCATCCAGCAAAATGATTCGGTCAAAATGGTCATCAAAAATGGTGTATTGATGCCGAAACAAAAGCAACGGCGGTACCGCACAGAAAGACCTTTCTCTTGCTCGCAATGCTCAGCCCGCTTCACTTTGCGCTCGAACATGGAACGTCATGTGAAACAACAACATCCTCAACACTGGAGTGTAAGACGGCCTGCGCCGCGGGCACCGCCTCCATACCCTTCCTCTGACTCTCTCGCAGATCGAGTCAAATTTGCGCTCCTAGCTCGACATCTCGAGCGTCCTATCCAACAGGAACGCTCTCCGATCCGTCGTGACTCTGATGAAGTCGCCGATAATGAAGAAGACGAAGATGATACTCTAGTTATAGATGAAGAGCCCGAATCTGACGCTAAAACAGAGCAACATGTTGCAGCGCATAGGGCCGCGGAAGAAATCCTAATGGCATCTCGCCAACAGGAGTTACATAAGGACTTTGATCTCAAAATCGCCGGTAATCTAATCAACAAGCCGGTGCCTATCGCCGAGAAGACTGAAACCGGTACTGACCCTATCCCGGTGCCTGTGGAGCCGTTGATGGTGCCCGTCGTGCCGACCAGGAGCGATGAGGAGGAAGACGAAGAAGGTCTAGTGGCATCCACCAGTGAAGGCAATAACTCCGGGAGCGATGAAAACAAgtCTGAATCGGACACTGGCGCGCTGCCACCCAAGAAGAAATCCGCCTACAGCCTGGCCCCAAACCGAGTATCATGCCCCTATTGCCACCGAAAATTCCCCTGGTCTTCGTCCCTCCGCCGCCACGTGCTCACTCACACCGGTCAGAAGCCTTTCAAGTGCCCGCACTGCCCTTTGCTCTTCACCACGAAATCCAACTGCGACCGCCATCTCTTAAGAAAGCATGGCGGCTCAGCGAGGGCTATACTTGCTGAACCTATCCCTGAAGCCGTATCACCGCCTCAAAGCGACATCCGAACAGTCCCAGAAAGGCCTTTCAAATGCGCCTCATGCCCTACTAGCACATTCTCTTCCCTGGAGACACTTAAAAAACACATGTCCTCTAGACACGGAACCGGGGATTCTCAACCCGCCTCACCAATCCCTGAGGTAGAGGAAAACCAGAACGGAGAGTTGGCGTTCAAATGCCATCTGTGCGAAGCGTCCTTTGGTGATCGGGGTGGAGCGCTGAGGCATTTGGCGACGATGCATGCTACGGAATATGACCAGCTGGTCAGTAAGGGCGCGTTGGATGCGGCCAGCGACCGGAGCGAGAGCGCCGATGACGATGAGAAGGGAAAATTTCCGGATCATGCTAACAGAAAAGTGGTATGCGCTTTCTGCGTCCGTCGCTTCTGGTCCGCCGAAGACCTCCGCCGGCACATGCGAACACATTCCGGAGAGCGACCATTCGCCTGCGACCTGTGCCGGCGGCGGTTCACGCTCAAACATAGCATGCTCCGTCACCGCAAGAAGCATAGAGATGAAACTGATGATGAAGAGGCATCGCCCCCTGATACTCCGGATACTGAGGCTGTTGGCAATGGGTACAACTATCACGAAGATGACGGCTCTGGCAATGAAATCCCGAGTAACATCAACAACAACAATTCGCCGCCGTCAACGCACTACGACAACAAACTCAAGATACAGATGACCTCGCGCAAATACTCCTCAGAAGCCGAGAACGACGGAGAAAATGGCGGCGACCTTATCGGCAAACTCCTCGGCATTGACAAGACCATAATCAACAAGCTTGTACTCTCATCGCCGGATGAAGCTGCCAAGTTCCTTGGTGTAAACAAATGA
Protein Sequence: MQGAANAPAAPAAEPPPSQQIKTEDVISEAKVETNEEMEEMRVEKQEPRVTRTTSIDSDNRSDRSEEEDSRRARKRAASTSPSPMPLDKRFARYECPKCGHRFDSGNAFDLHRFTAHGDETRGFNDLTFVDFSSKKFPEIARGVCERNPHVSITEQRFRCQICSRDFPCGQALDIHRKTCANPTRVQSPERVDRREDFFAKLDLRNRSYGIPGTLTPPMERFTPKFEDSHFTGNGIRHIDAARDLADIQSILNVTSTGSLLERLTGTRVPLESSVLTPPDTIGKEREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFHTPEPERRVEPTGRETPLSHFTPNFITDRHPVASLTPKPLADLPIPIIPREPETPTPRIKVKGIGQLTQIPEYRPPEFPIKNDDDMETYDEETPVDLSTNDNCDVLDLSKKKRDVEEDDEPKSKPRPAFEPDVAAVAASNFEKTQFLLAQQRLFETSLPKIDPSYYATQLSQLYAGAVPGLPGLPGLPPSFPINPYFLQPSFFPHPSDSQELAEIKQRIQKEIIRGLSMSGGRLVTGEQEAQPKLEPEEDDQPILRDSSPVPPPRSESPPRPLNNSLIQQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPSSDSLADRVKFALLARHLERPIQQERSPIRRDSDEVADNEEDEDDTLVIDEEPESDAKTEQHVAAHRAAEEILMASRQQELHKDFDLKIAGNLINKPVPIAEKTETGTDPIPVPVEPLMVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGALPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPEAVSPPQSDIRTVPERPFKCASCPTSTFSSLETLKKHMSSRHGTGDSQPASPIPEVEENQNGELAFKCHLCEASFGDRGGALRHLATMHATEYDQLVSKGALDAASDRSESADDDEKGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHRDETDDEEASPPDTPDTEAVGNGYNYHEDDGSGNEIPSNINNNNSPPSTHYDNKLKIQMTSRKYSSEAENDGENGGDLIGKLLGIDKTIINKLVLSSPDEAAKFLGVNK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00773242;
80% Identity: -