Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990305.1:1757408-1777537[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0016 0.18 14.0 0.9 1 23 219 241 219 241 0.99

2 10 1.5 1.7e+02 4.6 2.0 1 19 248 266 248 268 0.86

3 10 0.015 1.7 10.9 6.5 1 23 302 325 302 325 0.97

4 10 0.058 6.6 9.0 0.1 1 23 329 352 329 352 0.91

5 10 0.012 1.4 11.2 0.2 2 22 364 384 363 388 0.91

6 10 1.5 1.7e+02 4.6 2.0 3 20 398 415 398 417 0.92

7 10 0.0052 0.59 12.3 0.4 2 23 433 455 432 455 0.95

8 10 4.4e-06 0.0005 22.0 0.4 1 23 468 490 468 490 0.95

9 10 0.001 0.11 14.6 4.0 3 23 507 527 506 527 0.96

10 10 3.8e-06 0.00043 22.2 2.5 1 23 533 556 533 556 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0016	0.18	14.0	0.9	1	23	219	241	219	241	0.99
2	10	1.5	1.7e+02	4.6	2.0	1	19	248	266	248	268	0.86
3	10	0.015	1.7	10.9	6.5	1	23	302	325	302	325	0.97
4	10	0.058	6.6	9.0	0.1	1	23	329	352	329	352	0.91
5	10	0.012	1.4	11.2	0.2	2	22	364	384	363	388	0.91
6	10	1.5	1.7e+02	4.6	2.0	3	20	398	415	398	417	0.92
7	10	0.0052	0.59	12.3	0.4	2	23	433	455	432	455	0.95
8	10	4.4e-06	0.0005	22.0	0.4	1	23	468	490	468	490	0.95
9	10	0.001	0.11	14.6	4.0	3	23	507	527	506	527	0.96
10	10	3.8e-06	0.00043	22.2	2.5	1	23	533	556	533	556	0.94

Sequence Information

Coding Sequence: atgaagcatTTAGTAGCAGGGATATTTAATATTCAACATTTGACGGTTCCAAAAGACCCATCAGCAGAGAAACCAGAGCCAATACCAGCTTACTCATCAGAATCAGAATTAGACATGGACGAAACACTCCTACACTCCGAACCACAGACACCGTCTCCACTACTGGAACAACTAATGAATGTACCAACACCGTTGAATCATTCACCGGTGCATGTGCCGGAGACACCGGTGCATATATTGGAAACGTCAGTTTTGTGTGAAACGGATCAAGTGAATGAATTGGATGCTGTGCAAGTGAAAATGGAGGATGTGACGGAGGCCAACTTAGAAGCAGATCAGAAGTTAGAGGTTAAGTTAGAAGTAGACCTGGATCCCGATCCGGATAATCTGACGCTGCAAGAGATCAAGGCCGAGCTGCTGGGCGCGACTGAGATAGATGAGAGTGAGAAGGGAGGGAAAAGGAAGAAGACTGCGAAAAAGAAAGATGTCTCCAGGATATCGAAGAAATCCGAGCGACTTCAAGTGCAGGCGAGGCGGCACCGGTCGAACCAAGAACTTGAGGAGCATTTCGCTATCACGCTGTTCCTCACTGAAGAAGACCAGATCGAAGAGTTCCTAAAGAGGAGAGAGGGGGAGGGATATTTAGAAGGAAAATACAAGTGTGAGTTGTGTCTCAAGAGCTTTAAAGAACAGAAGTGGATGGATGCACACGTCAAGAAACACGAGCCCGCCGCAGGCTCCTACGTATGCAGTATCTGCAAGATCAGGTGCCGCACCCCTAAGTTGCATCGCACACATCGAGACTGCAACCACACCACTCGATATTCGTGTCGTCGGTGTAACTTTCTCACCTACAGCAAGGCACAAGCTTTGAAGCACCACGGTTGGCACGAAGGAGTGGAACACACGTGCCAGCACTGCGGCGCCACCTTCcgGAAGCACACAACATACATGGGTCACCTGCGGCGCGCGCATCCCTCCGCGCACATCTGCGGCGCGTGCGCACGCAGTTTCGTCAGCGCGTACGGCCTCAACCTACACGTCAAGGCTGTGCACAAGGACATTAACAAATTGGAGAACGACAGCATACGTTGCGAGGACTGTGACGTCACGTTCGTGTCCCGCCGCGTGTACATGAGACACGTGCTCACGACAGACAAACATAAGGACATCTCCAAAGATATCCTGGGATGCAGAAAGTGCGGCGAGCAGTTTCACACTAAAGAAGAGATGGATACTCACACGCACTATAAGGAGAGGAAGTACGTCAGAAAAGAAGCCCCGCGACGCTCCATCAAATGCGATGAGTGTTCCGAGGTTTTCTCTCACCCTAACGGCGTGTACCAGCACTACCTGCGCGAGCATCCTGACACGCCGTACCGGTTCGCCGTACGCAGACATTACCTGTGCGAGCAGTGCGGGAAAACCTTCAAGTCCCCGGGGCTGCTGCAGCAGCACTCGCTGACGCACCTTGGGCTCCGGCCGCCGCCCGCCAAGAAGACCGCGGGCCGGAACTGCTGCCGGCTCTGCGGGAAGACCTACAGCAAGCTCAGCGGTCTCTTCCGGCACAAACTGACTCACCTCGGCGTCAGACGACACAAGTGTCACATCTGTGAGAAGGCTTTCACGGACACGTCGAACCTCAAGCAGCACGTGCAGGGCGTGCATCTCAACATACGTCGAGTGCGGAAGCGATAA
Protein Sequence: MKHLVAGIFNIQHLTVPKDPSAEKPEPIPAYSSESELDMDETLLHSEPQTPSPLLEQLMNVPTPLNHSPVHVPETPVHILETSVLCETDQVNELDAVQVKMEDVTEANLEADQKLEVKLEVDLDPDPDNLTLQEIKAELLGATEIDESEKGGKRKKTAKKKDVSRISKKSERLQVQARRHRSNQELEEHFAITLFLTEEDQIEEFLKRREGEGYLEGKYKCELCLKSFKEQKWMDAHVKKHEPAAGSYVCSICKIRCRTPKLHRTHRDCNHTTRYSCRRCNFLTYSKAQALKHHGWHEGVEHTCQHCGATFRKHTTYMGHLRRAHPSAHICGACARSFVSAYGLNLHVKAVHKDINKLENDSIRCEDCDVTFVSRRVYMRHVLTTDKHKDISKDILGCRKCGEQFHTKEEMDTHTHYKERKYVRKEAPRRSIKCDECSEVFSHPNGVYQHYLREHPDTPYRFAVRRHYLCEQCGKTFKSPGLLQQHSLTHLGLRPPPAKKTAGRNCCRLCGKTYSKLSGLFRHKLTHLGVRRHKCHICEKAFTDTSNLKQHVQGVHLNIRRVRKR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -