Atur047280.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990303.1:1939958-1943658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.5 1.7e+02 4.6 0.2 2 23 5 27 4 27 0.90 2 15 0.022 2.5 10.3 0.7 2 23 52 74 51 74 0.95 3 15 1.2 1.3e+02 4.9 0.1 1 19 96 114 96 116 0.84 4 15 6.9 7.8e+02 2.5 0.5 2 23 149 171 148 171 0.92 5 15 0.12 14 8.0 1.1 2 23 196 217 195 217 0.89 6 15 0.2 23 7.3 0.9 2 23 283 305 282 305 0.94 7 15 0.14 16 7.9 0.6 2 23 330 352 329 352 0.91 8 15 0.0077 0.87 11.8 0.4 1 23 374 396 374 396 0.96 9 15 0.0052 0.58 12.3 0.2 3 23 402 423 401 423 0.95 10 15 0.11 12 8.2 0.4 1 22 428 449 428 449 0.97 11 15 0.1 11 8.3 0.3 1 21 456 476 456 479 0.84 12 15 0.013 1.5 11.1 1.7 1 19 486 504 486 509 0.83 13 15 0.0016 0.19 13.9 6.4 1 23 513 535 513 535 0.96 14 15 1.4e-05 0.0016 20.4 0.9 2 23 542 563 541 563 0.96 15 15 0.013 1.5 11.1 3.0 2 23 570 591 569 592 0.94
Sequence Information
- Coding Sequence
- ATGCGTGTCCTTCAGTGTTGCATCTGCTCCGATCTCTTCCAAGATCCCGCGCAATTTAGGGCTCATATTGATGCTGAACATTCTAATATAGACATTTCTAAGATAATTACATCTAACAATGCCGGACGCACGAGAGTAGATATCATAGACTTGCGTTGCAAGAAATGTACAGACAGCTTTGCCACATTAGAGACTCTAGTTACTCATTTGAACTTGAGACATGAATTGGGAATAAACACCAACTATCATCATGGGTTAGTTCCTGTAAAGCTAGAAAAGAATCATTATCAGTGCGTTATTTGTTCTAAATTGTTTACGGGTATCAAGCCGCTCTCGATACACACGGGTGTAGGACCATGGAAGAACCCGGAAGTCAAGCAGAACGCATCTATCATACTCGGGCATTCCTCAGTCTATCCCTTCCAGCAGACTGCTAACGTACTGCGATGTTGTTACTGTCTAGATGTGTACGAAGACCCTCAAGAGTTCAGGGAACATGTAGATTCGCTTCATGCCGATATTGACAAGTCCGATCTTAGACACTTTGATTCAGATACCTCGCTGCGCGTAGATATAACTGGCCTGCACTGCAAAATTTGTTACGCAGAATTCAACAATCTAGATAAATTGAAGGAGCATTTTGTTGAACATGACCTCAACGTGGCCGTCGCAGAACAAACTGGTTTGGTGCCGCTACGGCTGGATAAGAACAGTTTCGTCTGTGTCATATGCGAAAAAGTCTTACCAGACTATCTCGGATGGAGTCGGGATGCCGCCAAGCAGAACGCCCAAATGATATTGAAACACTCGACGGCGTATCCGTTCCTGCAAATCTCTTCCTTGTTGCGGTGCTGTTTTTGCCGCGACACTTTCGACGACCCCGCTCTCTTCAGAGTACACATGGATAGCGTTCACCCGAACGTCGATAGGTCCACGTGCCATAGAGGAAATCTGGATACCCAAACACGAGTAGACATAACGAATCTTCGCTGTAGAAAATGTATCAAATCATTCGCTTCCATTGAAGCTCTTGCCAAACATTTGCACGACGAACATGAACTAAACATAGAGTTGAGTCAAAGTTTGGCACTTGTGCCgttgaaattagaaaaagaccGTTACGAGTGTGTGGTATGTGCTCAAAAGTTCACCAGCACGATGCAACTATCCAGGCATACGGGGATGCACTATTTCAGGAATATATGCGACATTTGCGGAAAAAGGTTTGAAAGCCGCAGGGGAATCGATAACCATGTTAAAGTACGACATACGACTCGAACGTTCTACTGCAGGGGTTGCAAGAATTCCTATCCAACATTAGAAGCCAAAAGAGAGCATATGCGCACGAATAAATCTTGTTTACCCTTTAGGTGTACTATTTGTAAAGAACGTTTCCCCTTCTGGGAACGTAGGGAGGATCATTTAGTGGAAGTGCATggtaaagaaaagaaaatatttcgATGTACAGAATGCGAAAAAACTTTTGAACGTCGCACGTTATTATACTTTCATTTCAAGGCGGCTCATACGGAGGATCACAAATGTCAGTATTGCGAATTGACGTTTTCGACTAAAAGAGATCTACGCGAGCACACACACCAGCATACAGGCGAGAGGCCACTTAAGTGCCACGTCTGTGATAAATCCTTTGCTCGGGACAAAGCGTTAAGGCAACATCTTATCATCCACGACGACAGTAAAAAGAAAGTGTGCTCGGTCTGCAGTAGACTCTTCACTGATCTTAAGAAATTGAAAATGCATGTTCAAAAACACCATCCCGAGATTTTCTCTCATGAGTTTGGCCAAAAACGTCAGTGa
- Protein Sequence
- MRVLQCCICSDLFQDPAQFRAHIDAEHSNIDISKIITSNNAGRTRVDIIDLRCKKCTDSFATLETLVTHLNLRHELGINTNYHHGLVPVKLEKNHYQCVICSKLFTGIKPLSIHTGVGPWKNPEVKQNASIILGHSSVYPFQQTANVLRCCYCLDVYEDPQEFREHVDSLHADIDKSDLRHFDSDTSLRVDITGLHCKICYAEFNNLDKLKEHFVEHDLNVAVAEQTGLVPLRLDKNSFVCVICEKVLPDYLGWSRDAAKQNAQMILKHSTAYPFLQISSLLRCCFCRDTFDDPALFRVHMDSVHPNVDRSTCHRGNLDTQTRVDITNLRCRKCIKSFASIEALAKHLHDEHELNIELSQSLALVPLKLEKDRYECVVCAQKFTSTMQLSRHTGMHYFRNICDICGKRFESRRGIDNHVKVRHTTRTFYCRGCKNSYPTLEAKREHMRTNKSCLPFRCTICKERFPFWERREDHLVEVHGKEKKIFRCTECEKTFERRTLLYFHFKAAHTEDHKCQYCELTFSTKRDLREHTHQHTGERPLKCHVCDKSFARDKALRQHLIIHDDSKKKVCSVCSRLFTDLKKLKMHVQKHHPEIFSHEFGQKRQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -