Atur049709.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- jockey\pol
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:267632-281627[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.01 1.1 11.4 4.6 1 23 1141 1163 1141 1163 0.99 2 11 1.5 1.7e+02 4.6 1.2 1 23 1170 1192 1170 1192 0.95 3 11 0.38 43 6.5 1.8 1 23 1196 1219 1196 1219 0.98 4 11 0.46 52 6.2 7.2 1 23 1226 1248 1226 1249 0.96 5 11 8.6e-06 0.00098 21.1 0.3 2 23 1255 1276 1255 1276 0.97 6 11 7.4e-05 0.0084 18.1 4.9 1 23 1282 1304 1282 1304 0.98 7 11 0.0017 0.19 13.9 0.6 1 20 1310 1329 1310 1331 0.95 8 11 0.005 0.56 12.4 0.3 3 23 1345 1366 1343 1366 0.96 9 11 2 2.2e+02 4.2 0.5 1 23 1372 1395 1372 1395 0.91 10 11 0.00013 0.015 17.3 0.3 1 23 1404 1426 1404 1426 0.97 11 11 0.0018 0.21 13.8 0.4 1 23 1432 1455 1432 1455 0.91
Sequence Information
- Coding Sequence
- ATGGGAATAAATTTTATAGCCATTTATATCCCTCACCCAAATTTGAACCTAATTCCTGATCTGTCTACTATTTTTTTCTCTGTCCCCCCCCCTCTTCTTATCTTAGGCGACTTTAACTGCCATAATATCTCCTGGGGATCCTCACATAGCGACTTATTCTCCGGGTTCCTCGTGGACTTGTTTGATGATATTAACACCTCGGTCATCAATGATGGCACGCCCACTCACCGAGTGTACCCCGGGCAGGATCCCCAATCAGTTCTCGACTTAGTCGCATGCTCGCCCGACTTGTCTTGTTCGCTCTCCCTCCAGGTTCTGAATCAGTCTTTCGGCAGTGATCATTTCCCAATAATTATCTATAACCCATCTTCCGTGCTCCCTTTACCTGCCCCCGCCCCCCtccttaaatacaaaattgataAAGCTGATTGGCCTAACTTTTTACTTTCCGTGGAACAAAAACTGAGGGAACTAGATTTTCATTTGTTAAATGTTCAACAAAAATCTTCCTATTTTAAATTGTCCCTTTTGGAGGCTGCAGATGAACATATCCCCAAAAAAAACTCTCGTAACTGCAATATCCCATCTCCTCCTTGGTGGACTCCTGAGTGCACGGCAGCGGTCAAAGAGAGAAAGATCGCAGAACGAACTTACAACTCGTCCGGGCTCTCTGAGGACTTTATAACTTTTAAGAAAATATCAGCCCGCACCAAGCGTCttctcaataaaacaaaaaaacaagggTGGAAGGACTTTTGCAAGAGTCTGAATCCCAGGACCCCTCCATCTCTAGTTTGGAATAATATTAAGAAATTCAGAGGTTCTTTTAAGTCTGACAGCCCTTCCTCTCCAGATCCCTCCACCTGGATGGAGGAATTCATAAACAAAATTGCCCCTCCTTCGGTTCCAACAGAATCTTGCGTGAACCCTCCTTTCCCACCTGTCCCGTTAGGCCCACTCGATGAACCATTCACATTAACTGAACTGCAACTTGTTTTGGATGGACTGCGTAATAGCTCCCCTGGCGAAGACGGTATCCCGTACTGCTTCATGactaaattaaacaattacTCCAAAGAACTTCTTCTAGGCTTACTGAATTCATCGTTTATGTCTGGGGAAGTTCCTGATGAATGGAAGACCCACGTTGTCATCCCCATTCTCAAGCCCGGCAAGAATCCCCATGAAGCAACGTCGTACCGTCCAATCGCTCTTTCTGCAACTATAACCAAAATTTTCGagcatttaattaaaaacaggTTGGAATGGTTTGCAGAAAGTAGGGGTTTGATCGCCGACTCTCAGTTCGGATTTCGAAAAGGAAAATGCACCATGGATAGCATAAGCATTCTGACTACAGATATTAGGCTTGCCCTTTCAAAAAAGAACCACCTCGTCGGCTGCTTTCTCGATATTTCCGCAGCATACGACAATGTACAACTCCCACTGCTCAGAGCAAAAATGCTTCAGCTGAGCATTCCTGCGAGGTTAGTACACATTATATGTAGGCTGTTCATGGGGCGCTCCATCAAAATCCGATTTGGCAATTTCCACCACTCTCCTGTAACTGTATGGCAGGGTCTCCCCCAAGGTTCAGTCCTCAGCCCTCTTCTTTATAATCTATACACATTTGATCTAGAACAAACAGTCTCTCCATTTTGCAATGTCCTACAGTATGCAGATGACTTGGTCCTATATTCCTCTGCCCAGACAATTGACATGGCAAAGCTCAATCTCAGTGAGGGCCTCAGTTATCTCCAAGACTGGCTCGATGAACATGGGCTATCTCTTTCACCATCTAAAAGTTGCTCAGTCACCTTCACCAGAAGCCGTACAGTCCCTCCTGTAGATTTTGACTGCGAAGGGGAGGTTATCCCCAGTAAACCTACTGTTAAGTTTCTTGGAGTGATCCTTGATTCCAAAATGACCGGTGTTCCACACCTGGAATATGTAGTAGGGAAATGCGAGAGAGGCATCAACATCCTTCGTGCCCTTTCCGGAGTCTGGTGGGGTGCTCATCCATTCTGCCAGAAACTAGTTTATAACGCCATAGTACGCAGCCACATGGACTACGGATCTTTGGTCCTGGAGCCCTGCAACAAAACAGCACTTAAAAAACTTGATCTTATCCAGGCTAAGTGTCTGCGACTTATAGCTGGTGCTATGAAATCCTCACCGAAGAATGCCTTGCAGGTTGAGTGTGTGGATCCTCCGCTTGCCCTCCGCAGGCAGTTCTTGGCAGACCGCTATATGTTCAAAGCTTGCAGCTTCGCCAATCATCCCCTCAGGCCTCGCCTGGAGGCTCTATCGCAAGAGGTAGCTGAAAATGCATATTGGTCACATAGGGATCCACCAAGAATTTTGAATAGTCTTCAAAAAGTTAAAGATCTCCCCTCCCAAGTCTACACTTCTAATACAAATCCTCTATTTGAAGTAGAGTTTGAGACAATTTTATATAAACCACCAGTTTTATTGGATATTGGTATAGGCAAGGATGACCCGGCAGCgaattctaaatttaataaattcctAATTCAATGGCAAGACTACCTTCCAATTTATACTGATGCTTCTAAGCTGGAGACTGGTGGCTGTGTGGGAATAGCGGTGTGGATTCCAAAATTCTCCATCCTTTTGTCGCACAGGTGTCCTCCACAATCTTCTGTATTCACTGGAGAGTCTATCGCAATCCTTGAGGCAGCTTCTTATGTAGAAACCCACAACATATCCAAAgtAATGGAATCGGACGGCCTCCCGCCCTGGATCTGCCATGAGTGCGCATATCTGCTGCAGAAGGCTGTGCGGTTCAAACGCAAGCTGCTTAAAGCTAACACAATGCTTTGTGATTATTTAATGAGGTGTGCACCGTTCCCGATCGATGCCCTAGACCCTGAGCTCTGTAAGTATACAACACCGAACCTGAAGGAAACCCATACCCTTGCTTTTGACAACATCGGGAAGAGCAAGGCTGGTTTCCAGAAAATATTAGAGCATGAGAAGAAGCCAGTAATATCGGCTCTGGACTCGATAGAGCTGGCGCAACCAGCCAAGTTGGAGGCCCCGCCGGAGGACCCGGAGCCCGTCAAGATGGAGTTTGATTCCTACTCTGACTACGAGGACAACATCACACTTGAAGAATTCAGAGCGTCAGCCCCGAAAGTGTCCGACGGTGAGCCGCCGACGGTCCGCGAGCCCGGCAGCGCGGTGAAGGAAGAAGAGGAAcccaagaagaagaagacgaagAAGAAAGACCAGCCGAAGGCGCGGAGAAAGAAGAGCAAAGAGCCAGTCGAGGGTGAGGAGCCGAAGACGTCGATCCGCAAGACTGTGGAGCTGGACCCCACGAAGATCAGGATCGTGATGCTGAACCCGGAGGAACAGTTTAAGCAGAGCGAGGAAGAAAGCAAAGCCAAGTTCCCGTACCAGTGCCACCTCTGCTACAAGGGGTTCAACTTCGACACCAAGCTGGACAACCACATGAGGAAGCACAGTCCGTCCCGCGGCCCGTTCTCCTGCACGCTGTGCTCGATGTACTTCCCGACTGCGTACAGCCGCAGCGTACACGCACACATACACACGCGCCGCTACGAATGCTGTGCGTGCGGCCGGCGTATGACCGACCGCTCCTCCATACTGGACCACTACAGAACGCAACATGAGGGTATGGTGTCACATTTTACGTGCCATCTCTGCGGAAAGGTTTCAAATAATAGCAAAACTCATCGGGGCCACATGCGGAACCACCACAGCGGCCAGCGGCCCGAGTGCGAGCAGTGCGGCAAGACCTTCATCAACAAGGACTCGCTCGAGGAACACCGACAGATTCACCAAGGCATCAAGAACTACTCGTGCTCCGAGTGCGGCAAGCGGTTCCGCACCAGGACGCAGATCAAGCACCACCAGCTCAAGCACACCGACATCAAGGAGTACTACTGCGTCGAGTGTGATGTTAGATTCAAGTCGGCGCACAGTTTGCGACAACATTTAGTAAAGAGTTTGAAACACAAAGATAAACAGAGTTTAAAGTTCGGTTGCACCCGTTGCGAGAAGCGCTTCGACAACGCTCGCGCGCTGAACGCGCACACGCTGGTGCagcacgagggcgtgcggccgCACGCGTGCCCCGCGTGCCCCGCCGCGCTGGCGTCGCGCGCGTCGCTCGCCAAGCACACGCACCACGTGCACGGCGGCGCGCGCCCACAGCCGCGCCACGTGTGCGACGCCTGCGGGAAGGCTTTCAGAGGCAAATCCGTGCTGATCAACCACGTGCGCACCCACACGGGCGAGAAGCCGTTCTCGTGCGCGACGTGCGGCCGCAAGTTCTCGCAGCGCACCGCCATGCGCACGCACGTCGACCTGGTGCACCTCAAGCGCAGGCGCGGGaagAAACAAGAGCCGCCTGCGCCGCAGCTCGTGGCCGCGCCCACAGACACACCAAAAATAGACCTGTTCACCAAAGAAGAACCCCAGATAGTGTTTGACACCTGGAACCGACAGAACATGCAGAACTGCGAAGTTTATTTCACAGTCACCGCTGGCCCTTAA
- Protein Sequence
- MGINFIAIYIPHPNLNLIPDLSTIFFSVPPPLLILGDFNCHNISWGSSHSDLFSGFLVDLFDDINTSVINDGTPTHRVYPGQDPQSVLDLVACSPDLSCSLSLQVLNQSFGSDHFPIIIYNPSSVLPLPAPAPLLKYKIDKADWPNFLLSVEQKLRELDFHLLNVQQKSSYFKLSLLEAADEHIPKKNSRNCNIPSPPWWTPECTAAVKERKIAERTYNSSGLSEDFITFKKISARTKRLLNKTKKQGWKDFCKSLNPRTPPSLVWNNIKKFRGSFKSDSPSSPDPSTWMEEFINKIAPPSVPTESCVNPPFPPVPLGPLDEPFTLTELQLVLDGLRNSSPGEDGIPYCFMTKLNNYSKELLLGLLNSSFMSGEVPDEWKTHVVIPILKPGKNPHEATSYRPIALSATITKIFEHLIKNRLEWFAESRGLIADSQFGFRKGKCTMDSISILTTDIRLALSKKNHLVGCFLDISAAYDNVQLPLLRAKMLQLSIPARLVHIICRLFMGRSIKIRFGNFHHSPVTVWQGLPQGSVLSPLLYNLYTFDLEQTVSPFCNVLQYADDLVLYSSAQTIDMAKLNLSEGLSYLQDWLDEHGLSLSPSKSCSVTFTRSRTVPPVDFDCEGEVIPSKPTVKFLGVILDSKMTGVPHLEYVVGKCERGINILRALSGVWWGAHPFCQKLVYNAIVRSHMDYGSLVLEPCNKTALKKLDLIQAKCLRLIAGAMKSSPKNALQVECVDPPLALRRQFLADRYMFKACSFANHPLRPRLEALSQEVAENAYWSHRDPPRILNSLQKVKDLPSQVYTSNTNPLFEVEFETILYKPPVLLDIGIGKDDPAANSKFNKFLIQWQDYLPIYTDASKLETGGCVGIAVWIPKFSILLSHRCPPQSSVFTGESIAILEAASYVETHNISKVMESDGLPPWICHECAYLLQKAVRFKRKLLKANTMLCDYLMRCAPFPIDALDPELCKYTTPNLKETHTLAFDNIGKSKAGFQKILEHEKKPVISALDSIELAQPAKLEAPPEDPEPVKMEFDSYSDYEDNITLEEFRASAPKVSDGEPPTVREPGSAVKEEEEPKKKKTKKKDQPKARRKKSKEPVEGEEPKTSIRKTVELDPTKIRIVMLNPEEQFKQSEEESKAKFPYQCHLCYKGFNFDTKLDNHMRKHSPSRGPFSCTLCSMYFPTAYSRSVHAHIHTRRYECCACGRRMTDRSSILDHYRTQHEGMVSHFTCHLCGKVSNNSKTHRGHMRNHHSGQRPECEQCGKTFINKDSLEEHRQIHQGIKNYSCSECGKRFRTRTQIKHHQLKHTDIKEYYCVECDVRFKSAHSLRQHLVKSLKHKDKQSLKFGCTRCEKRFDNARALNAHTLVQHEGVRPHACPACPAALASRASLAKHTHHVHGGARPQPRHVCDACGKAFRGKSVLINHVRTHTGEKPFSCATCGRKFSQRTAMRTHVDLVHLKRRRGKKQEPPAPQLVAAPTDTPKIDLFTKEEPQIVFDTWNRQNMQNCEVYFTVTAGP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -