Basic Information

Insect: Apotomis turbidana
Gene Symbol: SCRT1
Assembly: GCA_905147355.1
Location: LR990280.1:7734389-7744819[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.4e-06 0.00015 23.6 3.5 1 23 575 597 575 597 0.98

2 5 0.0014 0.16 14.1 0.0 2 23 607 628 606 628 0.97

3 5 2.9e-06 0.00033 22.6 0.5 1 23 632 654 632 654 0.98

4 5 2e-07 2.2e-05 26.3 0.2 1 23 660 682 660 682 0.99

5 5 0.038 4.3 9.6 3.5 1 22 688 709 688 709 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.4e-06	0.00015	23.6	3.5	1	23	575	597	575	597	0.98
2	5	0.0014	0.16	14.1	0.0	2	23	607	628	606	628	0.97
3	5	2.9e-06	0.00033	22.6	0.5	1	23	632	654	632	654	0.98
4	5	2e-07	2.2e-05	26.3	0.2	1	23	660	682	660	682	0.99
5	5	0.038	4.3	9.6	3.5	1	22	688	709	688	709	0.95

Sequence Information

Coding Sequence: atgggggacttcaacgcaaagctGGGTAAGAGAGACGATGGGGAGCAGCTAATGGGGCAATTTGGAGTTGGATGTCGGAACTATCGGGGCCACCGACTGGCCGGTTTTATGGAGAAGGAAGGACTCTATATGATGAATTCCTTCTTCAGGAAGCGAGAGCACAGGAAGTGGACCTGGATGAGTCCCGACAGTGCAACAAAAAATGAGATTGATGTCATGTCGACGAGGAGACATATATTTAATGACGTCTCTGTGATCAATGCGGTCAaaaccggtagcgatcaccgTCTAGTAAGAGGCACTTTGAATATAAACGTCCAGTTAGAGCGCTCTCGattgatgaagtctacgctccggcCAGCACCAATCCAAATCCAAAACCCCGACAGTTTTCAGCTCGAACTCCAAAATCGTTTCGATTGCCTAGGTAGCGACATGGACGAATATAACGACGGGTTTGTGGAAGCTGTTCATTCCGttgggtctaagtttttcaagGCTCGACGAACGAACAAAACCAAAAAGCTCTCTGACTCTACTCTTAAGCTTATGAAGGAAAGGAACGAAATGAGACTACAATCCTCTGGTGACGCGACCTTATATAGCCAGCTCAATAGACGGATCTCCAAGGCCCTCACTCGTGACATACGCCGATTCAATACTAATCGTATTGAAGAAGCAATTGAGCGAAACAAGGGCTCCAAAGTCTTTGCTAAAGATTTGTCTATTGGGCAGAGCCAGCTGGCAAAATTAAGGACGGAGAATGGTAGACTTGTTTCCTCTAGACCAGAGCTTTTGAGGGAGATAGAGAGTTTCTATGGGCAGTTGTACACGTCAACACGCCAACCCGACCCCGATCTAGATACCGATCCTAGATCTAGATTAACCCGgcactataccgaagacatcccggacgtCAGCCAGTACGAGATTGCGacggctctcaaacagcttaaacACAATAAGGCACCTGGTGACGACGGAATCACAGCCGAGCTTTTGAAGGCAGGTGGAAAACCGATCCTTAAAGCTCTTCAGAAGTTGTTTGATTCCGTCATACTGGAAGGGAGAACGCCTAGGGCATGGAACAGAAGTATTGTGGTGCTCTTCTTCAAAAAGGGCGATAAGCCCCGCCCGCCTGAGTATGCGGAGCTGCGGAGCGCGCCGGTGCCGGAGCGCACGGCGGCCGACACGGAGGCCGCGCACGACCTGCTGTCGCTGGCGCACAGCGCGCCGGCGCTGCCGCCGATGCCTCCGCTCCCGCCACCGCCCCTGCCCCCCGCCGTCGTCACCGTCATCGAGCCCGCCCCGACTCCTCTGCTGCCGCTCTACACTTACACCATACAACCCACCAACATATACATAATCGCCGAAGAACCTCCGCCTCTCCCCGTCTACACGACGGTCCAGACCGTCAACCCATTCGAATTCGCCACCTTCGAACCGCAACTGAACTATATTCTACCGACAGTACCGAATTATCAACCGCCCTTCGAGTCAATGCCCATGGCGTTCccaccgccgccaccgccgccaccgcctccTCCGCCTCTGGAATCCGATTTCGAGGTTCGAGATCCTCCGGAGTTCGAGGCTCGAGATACTCCGGAGTTTGAGGCTCAGGATCCGCCGGAGCTCGAGATTCAAGATCCCCCGGAGTACGAGGTTCGAGAATTCGAGGAAGAATGTTCGCTCTCTCCGCCTCCGGAACGTCGGGCGAAATATCATTGCAACGAATGCGGCAAACGTTACGCGACGTCATCCAACTTGTCGCGGCACAAGCAGACGCACCGCAGCCTCGACTCGATGTCGGCCAAACGCTGCAACGAGTGCGGCAAGGCCTACGTATCCATGCCGGCGCTCGCGATGCATGTGTTGACGCACCGTATGGGGCACGAGTGCGACGTGTGCGGCAAGCAGTTTTCGCGGCCCTGGCTCCTGCGCGGGCACTTGCGCTCCCACACCGGTGAGAAACCGTACAGGTGCGCGTCGTGCGGCAAGGCCTTCGCCGACCGCTCCAATCTGCGAGCGCACCTACAGACGCACTCTTCGGACAAGCAGTATCAGTGCTGCCGCTGCCGGCGGTACTTCGCGCTCAAGAGCTACCTCAACAAGCACCTGGAGACGACGTGCCTGCCGCGCGAGAATCCGTGA
Protein Sequence: MGDFNAKLGKRDDGEQLMGQFGVGCRNYRGHRLAGFMEKEGLYMMNSFFRKREHRKWTWMSPDSATKNEIDVMSTRRHIFNDVSVINAVKTGSDHRLVRGTLNINVQLERSRLMKSTLRPAPIQIQNPDSFQLELQNRFDCLGSDMDEYNDGFVEAVHSVGSKFFKARRTNKTKKLSDSTLKLMKERNEMRLQSSGDATLYSQLNRRISKALTRDIRRFNTNRIEEAIERNKGSKVFAKDLSIGQSQLAKLRTENGRLVSSRPELLREIESFYGQLYTSTRQPDPDLDTDPRSRLTRHYTEDIPDVSQYEIATALKQLKHNKAPGDDGITAELLKAGGKPILKALQKLFDSVILEGRTPRAWNRSIVVLFFKKGDKPRPPEYAELRSAPVPERTAADTEAAHDLLSLAHSAPALPPMPPLPPPPLPPAVVTVIEPAPTPLLPLYTYTIQPTNIYIIAEEPPPLPVYTTVQTVNPFEFATFEPQLNYILPTVPNYQPPFESMPMAFPPPPPPPPPPPPLESDFEVRDPPEFEARDTPEFEAQDPPELEIQDPPEYEVREFEEECSLSPPPERRAKYHCNECGKRYATSSNLSRHKQTHRSLDSMSAKRCNECGKAYVSMPALAMHVLTHRMGHECDVCGKQFSRPWLLRGHLRSHTGEKPYRCASCGKAFADRSNLRAHLQTHSSDKQYQCCRCRRYFALKSYLNKHLETTCLPRENP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -