Atur050857.2
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:11083776-11098010[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.15 16 7.8 1.3 1 23 239 261 239 261 0.98 2 11 0.044 5 9.4 0.2 3 23 270 290 268 290 0.94 3 11 2.6e-05 0.003 19.6 1.8 3 23 324 345 323 345 0.97 4 11 4.7e-06 0.00054 21.9 1.3 1 23 354 376 354 376 0.98 5 11 9.7e-05 0.011 17.8 0.9 1 23 381 403 381 403 0.98 6 11 0.096 11 8.4 4.1 1 21 409 429 409 434 0.93 7 11 0.096 11 8.4 4.1 1 21 447 467 447 472 0.93 8 11 0.096 11 8.4 4.1 1 21 485 505 485 510 0.93 9 11 8.8e-05 0.0099 17.9 0.9 1 23 515 538 515 538 0.98 10 11 0.0041 0.46 12.7 0.5 1 23 544 566 544 566 0.94 11 11 0.00034 0.038 16.1 0.7 2 22 575 595 575 595 0.95
Sequence Information
- Coding Sequence
- ATGTCGTCTTTCTTGTGCTTCATATGCCATAATACTGTGAACAGTGATACAAATGCTGAAACTcgagaaaaatataaagatatgATTGGAATGAAActatgTCCTGACTCACACCTATGCCACATATGCTGCCATTTACTCAGGAAGCTGTGGTTATTCAAGTCCATATGTTTGAGAAGGAGCATGGAATATCCTATCCTATTTAGtgAGAAAGGCACCGTAACACTACAGAATAGTAATATAGAAAACATAATCCTATGCCCAGAGGCTGAGGAGTGTGATGAACAGCAAAACAGTACCTACCACTTCACATCTGGCAATGATAATATAGACACTAACCAATATGTCTCTTTAGAAGATAAAACTGACTTGCAAACAGACAACATAGAATTAGAACATGATAAAAAAGATGGCGATGATAATGATGGTGATGATAATGATtgtgatgataatgatggtgatgataatgatggcgatgataatgatggtgttgataatgatgatgacaataatattgataatgataatccCGAAACTGAAGATATTGAGAGACAAGAAACGGAAAACACAGAAACTGATGATGTAAATGATGAATCACAAGCAAAAGAAGAATCTGTCACATATACTGAGTTTTATAAAGTGACTCTAAGTGTGGAAGAACAGAGAGCAGAGTTAGAAGAAAAGAGAAGAGAAGATAAATATCTAGAAGCGGAATTTAAGTGCTACAATTGTGCCATGGGGTTCCTGTTTAAAGATACTTATCAGGCTCATATGATGAGGCATGAAGAATCAAACGGCGAGCACCTCTGCTCCATCTGTCTCCTCCGATTCGCTACAGCGGCCGTGCTGCGCGCGCATTTACTGCTCCACCGGGAGCGCCACGTGTGCGCGCGCTGCGGCCGCGccgtgcgcccgcgccgccggcTCGCGCACACCGCGCGCTGCGCGCCTCAGGGCAGTGAGGCCATATGCCATCTATGCTCCAAGACTTTTAGCGACGCCAACGCCCTCCAGCAGCACATCAAACGGTTCCACCTCTCGAAGACCAGCAACAAGAGCTACTCCTGCCACGTGTGCGGCAAGACCTACAACAACCAGGGCGCCGTCCGGACTCATATGATTAAACACATAAACAAGCGATTCACATGCGACCAGTGTCCCTCGACCTTCAGCAGCCCCTACACCCTGGCACAGCACAGGAAGAACCACAGCACCGTGCAGCTACACCACTGTGAGACTTGTCGCATCTCGTACAATTCGAGAAAGAGTCTTCTGGCGCATCTGAGGAACGCGCTATGCCATCAACTTACTGTGGCGAACTATAGTAGCGTGCAGCTACACCACTGTGAGACTTGTCGCATCTCCTACAATTCGAGAAAGAGTCTTCTGGCGCATCTGAGGAACGCGCTATGCCATCAACTTACTGTGGCGAACTATAGTAGCGTGCAGCTACACCACTGTGAGACTTGTCGCATCTCCTACAATTCGAGAAAGAGTCTTCTGGCGCATCTGAGGAACGCGCTATGCCATCAACTTACTGTTTTCGTCTGCCCCATATGTTCGCGGAGCTGCGCGAACCGGCGCTCGCTAGCCTCGCACACGCAGACGGTGCACAGCGCACGCGCGCCGCACGCgtgcgcggcgtgcggcgcgcggTTCGGCAGCCGCAAGAGTCTGCGGGCCCACGAGCGCCGCCACCGGGGCGAGCGGCCGGCCAGCGCCGTGTGCCATCTGTGCGGAGCCAGCTTCAAGGGTAACAACAAATTGAACAGACATCTTCGGTCCGTTTGTGAGAAGAATCAGTTAGACGAGGAGCTGTCGGCCTTCTACAACCAAGAAGAGCTTACACATTAA
- Protein Sequence
- MSSFLCFICHNTVNSDTNAETREKYKDMIGMKLCPDSHLCHICCHLLRKLWLFKSICLRRSMEYPILFSEKGTVTLQNSNIENIILCPEAEECDEQQNSTYHFTSGNDNIDTNQYVSLEDKTDLQTDNIELEHDKKDGDDNDGDDNDCDDNDGDDNDGDDNDGVDNDDDNNIDNDNPETEDIERQETENTETDDVNDESQAKEESVTYTEFYKVTLSVEEQRAELEEKRREDKYLEAEFKCYNCAMGFLFKDTYQAHMMRHEESNGEHLCSICLLRFATAAVLRAHLLLHRERHVCARCGRAVRPRRRLAHTARCAPQGSEAICHLCSKTFSDANALQQHIKRFHLSKTSNKSYSCHVCGKTYNNQGAVRTHMIKHINKRFTCDQCPSTFSSPYTLAQHRKNHSTVQLHHCETCRISYNSRKSLLAHLRNALCHQLTVANYSSVQLHHCETCRISYNSRKSLLAHLRNALCHQLTVANYSSVQLHHCETCRISYNSRKSLLAHLRNALCHQLTVFVCPICSRSCANRRSLASHTQTVHSARAPHACAACGARFGSRKSLRAHERRHRGERPASAVCHLCGASFKGNNKLNRHLRSVCEKNQLDEELSAFYNQEELTH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148863;
- 90% Identity
- iTF_00148863;
- 80% Identity
- -