Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990295.1:22029952-22039428[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.005 0.57 12.4 0.3 1 23 308 331 308 331 0.92

2 11 0.3 34 6.8 3.7 1 23 347 369 347 369 0.90

3 11 3.3e-05 0.0037 19.3 2.5 2 23 375 396 374 396 0.96

4 11 0.026 3 10.1 0.2 3 23 402 423 401 423 0.94

5 11 0.0014 0.16 14.2 2.9 1 23 426 448 426 448 0.96

6 11 0.0015 0.17 14.0 0.1 2 23 519 540 518 540 0.95

7 11 0.21 24 7.3 0.1 2 23 560 582 559 582 0.95

8 11 1.5e-06 0.00017 23.5 4.1 1 23 588 610 588 610 0.98

9 11 3.3e-05 0.0037 19.3 0.8 2 23 616 637 615 637 0.96

10 11 0.27 30 7.0 3.5 2 21 644 663 643 666 0.93

11 11 0.49 56 6.1 2.7 3 19 705 721 704 726 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.005	0.57	12.4	0.3	1	23	308	331	308	331	0.92
2	11	0.3	34	6.8	3.7	1	23	347	369	347	369	0.90
3	11	3.3e-05	0.0037	19.3	2.5	2	23	375	396	374	396	0.96
4	11	0.026	3	10.1	0.2	3	23	402	423	401	423	0.94
5	11	0.0014	0.16	14.2	2.9	1	23	426	448	426	448	0.96
6	11	0.0015	0.17	14.0	0.1	2	23	519	540	518	540	0.95
7	11	0.21	24	7.3	0.1	2	23	560	582	559	582	0.95
8	11	1.5e-06	0.00017	23.5	4.1	1	23	588	610	588	610	0.98
9	11	3.3e-05	0.0037	19.3	0.8	2	23	616	637	615	637	0.96
10	11	0.27	30	7.0	3.5	2	21	644	663	643	666	0.93
11	11	0.49	56	6.1	2.7	3	19	705	721	704	726	0.89

Sequence Information

Coding Sequence: ATGGACCAAGGTACCGCCACTATGAATTCAGAAGGTTACCCTGTACTTTTGCTGCCAAAAAAGTGCACCACATTAGAGACAAACTGCGAAGTGTCCGAGAATGTTTTCATTGAGTTAAATATCTCCTCTCCTGACACTGAAGGGAATGAAATGTGTATTTATAATGGATTCTGTAATGTAAAGTTAATAGAAAGTTATGATATGAATCTATCCCACAATATGAAGGAGAATGGTCCAGCTGAGTGTAATGATAGTGATCTTATTTCTGTACTGGTTGACGAGTCCGGGAATCAAATAGCTGATTCATTCAACCAAAGCCAAGTGTGGATAGATCCAGCTAGAAGCCCATTTGtttataatcattatgacaCGGACCAACAAGGGCATTACTCCATCTATCATAACACTAGAACAAATCATATAACGGTTGAGCAACATAACACATATATCACCCAAAATGTGTATAACTATAATAAAGAGGCAACACTGTACCAGTCTACAGATGAATTTGAGCACAAGAAGTTCCGGAAAGTGCAAGTCAGCGAATCTAGTACAACTCAGCAGAATACTACGGATCCCAACttcaatttgtatgaagaagATGAGTTTGAGTGTGGAGTGTTTTTGTCTCAGTTACCCGAAGAGATTTTAAATGAGAAGGAGAACCGTGTTAGGGAGGAACGGAAGTATATAGGTTTGCCGAGTGAGAATGGAGCTCTGAAGCAGTTGATGTCATCAGACATTCAGTCGTCTACGAAACAACGAAAGACTATATTGTTCCTCGGTCATGACTCACATTACGGACAGACTATACAGAAAATTGCTATGAATGATCCATATCTGGTGTGTTCGGTGAAAGAGGAAGTGAACTCTCAAGTTGTGTATGaagaACCAGACTACTCTAATCCAAGCCAGAAGAAGTATCAGTGCGACAAATGTAAGCAGATCTTCGACCAGATCATCGAGTTCCGGCAGCACATGGTCGGGGACCACATCAGCCCTAGGAACTACGACGGACGTTCAGTCGGCGAAATCAAGTTCCTATGCACAGAGTGCGGAAAAAACATAAAATCCCAAAAGAAATTCGAGCAGCACTGCATGAGCCACGGCGACCCCGACTTAGAATGCAGCAAATGCCACAAAGTGTTCGCCTCCAAGTTCACTCTCCGCGCTCACACCAAAATACACAGCCGGAAACACGGCTGCGTCTACTGCTCCAAGACATACACCAAAATGGAGGCCCTGAGGACACACGCCGCTAAAGCACATTGCATTTTCATGTGCGAACATTGCGACTacaaaactaataataaaaacaacttGAAAGATCACGAGAATGAACATAAGGACTCCGATTTTGAAATGTTGGACGACTCGGTGAACTCTAGCGAGGTGGATATGATAACTCTTGAGCTGCCGACGGAGCTGGGAGATGAAGTGAGGAGGGTCAAAGATGAGGATATCCGGAGGGCTGACTCGGTGATTGCGAAGGTGATGTCCAATGAGATTTTCGGGTCCAAAGGGAAGAATCGGCAGTACAGGAAATGTAGCAAGGTGTGCGACGTGTGCCTAAAGATGTTTGACCGCATCGGCGACCTGAAGCGGCACCTGATCGAGCACATCATCAAAAGCACGCTGGACAAAATCCCGGTGGGCCGCCACGGCACCCTCAGTATCGTGTGCGAGGTGTGCCAGGCCGAGTCCTTCTCCAAGCtcgacaggtACAAGGCGCATCTCCGGGAGCACGCCAAACTCACCATATACAAGTGCACATTCTGCGACAAGTCCTTCAGCGATTCGAGCAACTTCTCCAAACACAAGAAAATCCACGGGACAACATACCTCCAATGCGATTTGTGCGGTAGGAAATTCAATTCTAAACGAATGCTGATACAGCATATGGATTACCACAACAAGAACCAACCTATACCGTGTCAATTTTGCAATAAGCTGTTCCATTTTGAGTCAATGTTGAACAAACATATCAAATGCGCGCACGCGAATACGCTGAATAAATTCAAGTGTaggttttgttataattatttcaaGACTTTGAAAGAGAAGTGGGATCATGAATGGTCGATTCATAATGTGAGGAAGATGATCGTGGATTGTCTGATCTGTGACTCGAAGTTTAGGAAATATACGGAGCTGAAAAAGCATTGTTCGATGGTCCATAATGTTGAGATCCCGCCGGCCAAGAAACTGTGGCCAAAGTAG
Protein Sequence: MDQGTATMNSEGYPVLLLPKKCTTLETNCEVSENVFIELNISSPDTEGNEMCIYNGFCNVKLIESYDMNLSHNMKENGPAECNDSDLISVLVDESGNQIADSFNQSQVWIDPARSPFVYNHYDTDQQGHYSIYHNTRTNHITVEQHNTYITQNVYNYNKEATLYQSTDEFEHKKFRKVQVSESSTTQQNTTDPNFNLYEEDEFECGVFLSQLPEEILNEKENRVREERKYIGLPSENGALKQLMSSDIQSSTKQRKTILFLGHDSHYGQTIQKIAMNDPYLVCSVKEEVNSQVVYEEPDYSNPSQKKYQCDKCKQIFDQIIEFRQHMVGDHISPRNYDGRSVGEIKFLCTECGKNIKSQKKFEQHCMSHGDPDLECSKCHKVFASKFTLRAHTKIHSRKHGCVYCSKTYTKMEALRTHAAKAHCIFMCEHCDYKTNNKNNLKDHENEHKDSDFEMLDDSVNSSEVDMITLELPTELGDEVRRVKDEDIRRADSVIAKVMSNEIFGSKGKNRQYRKCSKVCDVCLKMFDRIGDLKRHLIEHIIKSTLDKIPVGRHGTLSIVCEVCQAESFSKLDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGTTYLQCDLCGRKFNSKRMLIQHMDYHNKNQPIPCQFCNKLFHFESMLNKHIKCAHANTLNKFKCRFCYNYFKTLKEKWDHEWSIHNVRKMIVDCLICDSKFRKYTELKKHCSMVHNVEIPPAKKLWPK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654719;
90% Identity: iTF_00148793;
80% Identity: -