Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990296.1:19018981-19034713[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.2 13.8 4.9 1 23 342 364 342 364 0.98

2 12 0.12 13 8.1 0.1 2 23 372 394 372 394 0.93

3 12 0.56 63 6.0 3.3 1 23 398 420 398 420 0.87

4 12 0.64 73 5.8 0.1 1 23 425 448 425 448 0.95

5 12 0.025 2.8 10.2 0.0 3 23 453 474 452 474 0.94

6 12 0.018 2.1 10.6 0.3 1 22 486 507 486 511 0.93

7 12 0.0085 0.96 11.7 0.2 2 23 530 552 530 552 0.94

8 12 0.13 14 8.0 1.5 3 23 571 592 570 592 0.96

9 12 0.0028 0.31 13.2 1.1 2 23 606 627 606 627 0.96

10 12 0.36 41 6.5 0.0 3 23 634 654 633 654 0.93

11 12 7.3e-05 0.0083 18.2 1.1 1 23 660 682 660 682 0.97

12 12 2.1e-06 0.00024 23.0 1.2 1 23 688 711 688 711 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.2	13.8	4.9	1	23	342	364	342	364	0.98
2	12	0.12	13	8.1	0.1	2	23	372	394	372	394	0.93
3	12	0.56	63	6.0	3.3	1	23	398	420	398	420	0.87
4	12	0.64	73	5.8	0.1	1	23	425	448	425	448	0.95
5	12	0.025	2.8	10.2	0.0	3	23	453	474	452	474	0.94
6	12	0.018	2.1	10.6	0.3	1	22	486	507	486	511	0.93
7	12	0.0085	0.96	11.7	0.2	2	23	530	552	530	552	0.94
8	12	0.13	14	8.0	1.5	3	23	571	592	570	592	0.96
9	12	0.0028	0.31	13.2	1.1	2	23	606	627	606	627	0.96
10	12	0.36	41	6.5	0.0	3	23	634	654	633	654	0.93
11	12	7.3e-05	0.0083	18.2	1.1	1	23	660	682	660	682	0.97
12	12	2.1e-06	0.00024	23.0	1.2	1	23	688	711	688	711	0.98

Sequence Information

Coding Sequence: ATGGTGGCATACTGCTGTGTCAAAGGTTGTAATAACAACAGCAGCGCCAAGAAGAAAGATCCGAATGATATGACATCGTTTCACGCCTTCCCATCAAATATAGAAATGAGACAGAAATGGCTGAGAGCTATTGGACGGCCGGACTGGAGTCCTCCTGGCTACTCCCGAGTGTGTAGCACCCATTTCAGCTTTGAACAAATAAACCATGATGGACGAAGGATAAGGATTAAGGATGATGCAGTCCCCATTAAAGATTTACCTGCCAATTCTAACTTCGAGGCATCTGAAGTGGAGGTATGCAGGTTCTGCCTGGCCGCAGAGGTGCGACTGTACAGTCTCCAGGATGGGGTGCACAAGTTATACCTGGAGTCCATAGTAGGCTATAATGAAAACTACAATATAGAGGGGTTACCACAGTTCATCTGCTATGAATGTGCAGCTCACCTGAAGAAATGCTATTATCTATTGCAAAAGAGTTTGACTGTACAAGCCACTTTACTGGACATATTTGCTCAATATGggaagATAACAACTAATCTTATTAACACAAAGAATCTGAAGGACCTGAATTTGTCGTCACcattgtccatacaaaaaataattgttgAAGATAATTTGAAAACCGTAGACAGCGTTGATTACATTAGAATTCCTAAATTAGAAGTTACAAATATTGAAATGCATCCGGAAAATATACCAAATACTGAAAAGTGTGAAGGTTTCAATTTAGACATTAATGAAGACAGAGAATTAAAAATGGATGACAGGTCAGATTCGCTTCATGATGCCTTAAATTCTGCGGATTCATGTTCAGATGATGAAATTAAACCTGAATACGAGAACATAGAAGTTGAAGAATGTAAACAAAAGAATGTGAACAAGTTATTAAAGTCAAATGTTGAAGGGTTAACACCAAATGAAATTAATATGCagaagtattttaatattgtgcGATTAACGTTAGAACAACAAATAGAAGAATGGAATAAAACCAAAGAGAAGAAACAAATTACTGGAGAATCATTCACCTGCGATATATGCTCAAAAGTGTTTGCACATCATAATAGCTATCGTCTGCACACGCAGAGTCACGATCCCACTCGAGGGAGTGCAGTGTGCCCGGTGTGCAAACTGCGCTTCAAGACCGACGCCCTGGCGCGCTCGCACGCCAACCGCGCTCACGCCAAGAAGTTCTGCTGCAAGCTGTGCCCCAAGACTTTCTACAATGTCGTCGTAGCGAAGAAACACCACGCCTGGCACTCGGGCCACGTGTACCGGTGCGGCTCGTGCGCGTTCAGCTCGGCGCACGCGTCGTCGCTGGGCGCGCACGCGCGCGGCGCGCACGGCGGCGCGGCGTGCGCGCGCTGCGGCCGCGCCTTCGTCAGCGCCCGGGGGCTGTTATTGCATGAGCGGGCCGTGCATCGGGGCGCATCTGACTCGGAGGAGAGCCCGAAGTACCGGTGTCAGCAGTGCGGGCTCGACTTCAGGTCTGAGGGGGCGAGAAGAGTCCACTTACTCACCTCCGAGCGACACAAGAAGAAACCCTCTTTATGTGACACAACACCTCTTGACCCTCGCCTCAAGAACACATGCAACAAGTGCGGCGTGCAGTTCCCTCAGCTCAGGCAGCTCGTGGAGCACGGCCGGGCGCAGCACCGCGCGCGGCGGAAGGCAAGCTGGCGGCTGCCCGGCGACTGCTTCCCCGCCAACTGCGACCACTGCGGCGTCGTGGTGAACAGTCGCTCGGAGCACTGGCGGCACGTGCGGCGCGCGCACCCCGCGCAGCGCGGCTCGTACCGCGCCGTCGTCACCGCCGTCTGCGACGTCTGCGGGAAGGGCTTCCAGAACTCCACAAAGCTGCACCTGCACGAGCTGCGGCACGCGCCGCCCTCGGTCGCGTGCGGCGCGTGCGCGCGGCTGTTCTACGACAAGTACGCGCTGGCGCGCCACGCCGCCACGCACGCGCCCGCGCGCCCGCACCGCTGCGCGCGCTGCCCGCTCGCCTTCAAGCAGCGCGGCAACCTGGAGAGACACTCCCggGTACACACTGGCATAACCCCGTACGAGTGTTCGATGTGCGGCAAGAAGTTCAAGTACTCGTCCAGCATGAACCTTCACGTTCGCACCGTGCACTACAAGCTGCCGCATCCGCCGAGGAAGAGGAAGAGCAAAAAATTGGACGAAAGCGATTatgggaaataa
Protein Sequence: MVAYCCVKGCNNNSSAKKKDPNDMTSFHAFPSNIEMRQKWLRAIGRPDWSPPGYSRVCSTHFSFEQINHDGRRIRIKDDAVPIKDLPANSNFEASEVEVCRFCLAAEVRLYSLQDGVHKLYLESIVGYNENYNIEGLPQFICYECAAHLKKCYYLLQKSLTVQATLLDIFAQYGKITTNLINTKNLKDLNLSSPLSIQKIIVEDNLKTVDSVDYIRIPKLEVTNIEMHPENIPNTEKCEGFNLDINEDRELKMDDRSDSLHDALNSADSCSDDEIKPEYENIEVEECKQKNVNKLLKSNVEGLTPNEINMQKYFNIVRLTLEQQIEEWNKTKEKKQITGESFTCDICSKVFAHHNSYRLHTQSHDPTRGSAVCPVCKLRFKTDALARSHANRAHAKKFCCKLCPKTFYNVVVAKKHHAWHSGHVYRCGSCAFSSAHASSLGAHARGAHGGAACARCGRAFVSARGLLLHERAVHRGASDSEESPKYRCQQCGLDFRSEGARRVHLLTSERHKKKPSLCDTTPLDPRLKNTCNKCGVQFPQLRQLVEHGRAQHRARRKASWRLPGDCFPANCDHCGVVVNSRSEHWRHVRRAHPAQRGSYRAVVTAVCDVCGKGFQNSTKLHLHELRHAPPSVACGACARLFYDKYALARHAATHAPARPHRCARCPLAFKQRGNLERHSRVHTGITPYECSMCGKKFKYSSSMNLHVRTVHYKLPHPPRKRKSKKLDESDYGK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00149465;
90% Identity: iTF_00149465;
80% Identity: iTF_00149465;