Basic Information

Insect: Apotomis turbidana
Gene Symbol: tc1a
Assembly: GCA_905147355.1
Location: LR990286.1:26575487-26597815[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.06 6.7 9.0 4.3 1 23 578 601 578 601 0.95

2 7 0.00018 0.021 16.9 1.2 1 23 777 799 777 799 0.98

3 7 8.4e-05 0.0095 18.0 1.3 1 23 804 826 804 826 0.97

4 7 9.6e-06 0.0011 20.9 0.8 1 23 832 855 832 855 0.93

5 7 1.9e-06 0.00022 23.1 1.4 1 23 861 883 861 883 0.99

6 7 2.1e-05 0.0023 19.9 3.1 1 23 889 911 889 911 0.99

7 7 6.2e-06 0.0007 21.5 2.7 1 23 917 939 917 939 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.06	6.7	9.0	4.3	1	23	578	601	578	601	0.95
2	7	0.00018	0.021	16.9	1.2	1	23	777	799	777	799	0.98
3	7	8.4e-05	0.0095	18.0	1.3	1	23	804	826	804	826	0.97
4	7	9.6e-06	0.0011	20.9	0.8	1	23	832	855	832	855	0.93
5	7	1.9e-06	0.00022	23.1	1.4	1	23	861	883	861	883	0.99
6	7	2.1e-05	0.0023	19.9	3.1	1	23	889	911	889	911	0.99
7	7	6.2e-06	0.0007	21.5	2.7	1	23	917	939	917	939	0.98

Sequence Information

Coding Sequence: ATGAGGAACGTAAATCCTCATCTCCTGGAAGACAAAATGGACGAGGCAGTGACCCACTACATCACGCACCAGCCCAGCGAATCGGTTCATGTAGATGCTAATGCTCTGGCTCTGAACATACAAGAGGATGAGGGAGGCCGAGTGGTGACCGTCATGAACTCACAGAACTTCAGTCAACAGATGTGCCGGCAAGTGTCAGTAGGTGATCATGTGGAAGGAGGGCAATGGGGGGAGGAGATCTTGGACCCTGAGAGCCGGTTGGCGGCCATCGTGGCTCACCTCACCAAGACCGGCAACCCGCATTACCACCCACCCCATAAGATCACTTCAGTGAGAGGCGATGTGGAGTCTTCAGTCATGCTTGATGGCCAGATGAGACTCTTCAATGCACAAACTTTGGACCAGCAAGGTGAGTCTATAGTGGTGCAACTGCCGACGCTGCCTACGCTGCCGCCACTGCAGGAGATGAAACGCTGCCCTGACGCCGACTGGTTTAACAAGGCCAAGACTAACTTGAAGGAAGAGGAAAACTGGGAGTTTATTGGATCAAGTACGTTCAGGGAGCCCAAAGTAACCAGCAAGGTCGAGGATCGAAGAATAGTGACGATGAGCAAGATAAATCGACGCTTGACAGCTACAGAAATCTGTGCGGAAATAAACAGCAGCCGTGAAAAGCCCGTGTGCGTCTCTACTATAAAACACCGACTACTTCAACACAATCTCCGGGGTTGTGTAGCTGTTAAAAAACCATTACTACGCAAACAAAACAAGACAAAAAGATTGCAATGGGCTATTTCTCACAAGGATTGGACTTTTGCAGACTGGTCGAAAGTATTATGGACAGATGAATTAAAGTTCGAAATTTGCGGGTCAAAACGTCGAACGTTTGTTCGCCGCACACCGCAAGAAAAAATGCTGGAGCAATGTGTTGTACCAACTGTGAAGCATGGTGGAGGGTCTGTCATGGTGTGGGGCTCGTTCAGTGCAAATGGTGTTGGAGACATCGTAAAAATCGATGGTATTCTTAGAAAAGAGCAGTACAATAACATTTTAATAAGACACGCGAGCGATAGTCCCATGTTGGAGTCCGACGGGCAGGTCTTGGAGCTCCCGGACGCCTCCCCCGGCCAGAGCCGGCAGCCCAGCAAGAAGAGCCTGCCGCACAAGAAGCGGATATCACGCAAACTGAAACGGAACACCGGAAATACTACACCGCAACAGGACATAGTAGTGATCAGCTGTAACGATGAGGTGCCGCAGGAAGAGATCCTGCCGGACAGCTTCGTGGCGCACGCGGGCCCGCACGCCGCGCACCTCGCGCACGACACGCACCACATCACGCACGAGGTCCGGCCGGTGTTAATATGTTCCCTCTGCGGAGAGTACTACGGCGAGGAACAGCTAAAGTTCTACCAACACCTGAAGCAGCACTACGAGCCGCACGCCACCATCATCATCGAGAACCCCGTCTCTGACTTGGGGATCGACAAGATGACAAACACATGCATAGAAGACAACGTGGCGACCCTACCCGACTCGATAGTAGAGTTGTCCTTAGAAAACACAGTCCCGAAGACCATGTACCAAACGATGGACAAACATATCATGTACACGTCGAGCGAGAAAACCCTCCATTACTCCAAGCTGCAGTACTCCATGGCGAGCGAGAAGGAGCCGGCCAGCGAAGTGGAGAAGACGGACTTGTATGACACTCTGGACAAGCTGGAGATATATAATTGTATGAAGTGCAGCAAGTCTTTTAGGAAACAGAAGCAATGCGAGGCGCATATCAAGGAGATGCATGGGAATGGAAAGCTGGAAGATATGGGCGAATTCAGCGAGCCGGAGGACCTGATGGAGGGCATCCACGTGGCGGTGGAGGGGGtgggggagggggagggggagggCGGGGACGGGGAGGGGGCGGAGGGGTACGaccccgccgccgcgctgctgccGCACCTCACCGTCGAGAACGGCACCGTGCATCAGGACCACGTGCGACACTGGTACATGCGCGGCAACCAGGCGGTGGGCTGCAGCGCGGACGCGTACTGCCCGGTGTGTccgcgcgcgcccgcgcccgcgcacaTCTCGCACGACGCGCACAGCTCCGCGCACAGCTCGCACGACGCGCACGCGACGCACGACACGCACGCGCCGCATGACACGCAACTCAAAGAGGAAGTCTTCCAAAGAATATTCGACGTCGAAGTACCTACGACGGAAAACTCCAATTTCACCGAAAACATCATACCCGACGCCGAATTACCTGAACCCGAGAAACCTGAGGAAAAACCCGAGAAGGGGAAGAAGGCGGGAAAGAGCTTCGAGTGTCCCCAGTGTGGAAGGGTGTTCCAGCACAGGAATAGCTTGCTGTACCATGTGCTGTCCCATAAGGGGAAACAGCATGTGTGTAGAGAGTGCAATAAGGGGTTCTACACGTCTGGAGCGCTCAAGATCCACAAGCGCGTGCACAACGGCGACCGGCCGTACAAGTGCGAGGAGTGCGACCGCGAGTTCCGCCAGTGGAGCGACCTCAAGTACCACAAGGTCTCGCTGCACTCCAACCAGAAACACTTCAAATGCGAATTTTGCGGCAAGGAGTTTGCCCGCAAATATTCTTTGAGCGTCCATCGGCGGATTCACACGGGCGAACGCAACTACAAGTGCGAGTACTGCAACAAGAGCTTCCGAGCGTCGTCCTACCGGCTCTCGCACATGCGCACTCACACAGGCGACAAGCCGTTTAAATGTACGCAATGCGGAAAATGCTTCCGAGTTGCCGGCGATCTACGGCGGCACTCACTCACGCACGACAAACACGCGCACCGCGCTGACAAACTTGTCAAGGTGAAGCAAGAGCACGACAAGTCACCCAAAAAGGAcaagaaagaaaaagaacagaAGAGCAAGAAGGTAGCCGCCGCCTCCACAACCAAACTTCCAATCCTAAAGAGCATACTAGACAGAAAATCACCTAAGAACAAAAAAGACGTTATCAAGAAAATTGGGGCGCCAAATGTAACCGTCAATCCTAATAAAGAAGAAGGTCAGTTTAAAATCAATAATGAATTCACAAATAACGTAGAAGTATTCGACACTAGGCATTATAAATTTAAGGAAATATACGTGAGTAAAGATGAACAAATGAGACAATACGATCTAGAAGATGAAAGGTTGCCTGATGAGAGGAACTTCGCAGTTCTTAAACCTATGTTCAGAACTGCTAATGATTCTGTTGAAGCTGAGAAGATTTACCCTAATCGGACTGAAAACACAGACGGTAAGATGGCAGTTTTTATAGAAAAGAAGGAATACGGAGGATCGATAGTGTCAAATTCGCAGGTGACTCTGTCTGACATTAGGCATTTAGAAAGAGAGGTGCGAGACGTGAGGAGCGACAGTATAAATGGAGAAGCTATTGAGAATGGACTCCTGGAGAGGTTGGCGGCGTTGTATAACATACCGGCTGTATGA
Protein Sequence: MRNVNPHLLEDKMDEAVTHYITHQPSESVHVDANALALNIQEDEGGRVVTVMNSQNFSQQMCRQVSVGDHVEGGQWGEEILDPESRLAAIVAHLTKTGNPHYHPPHKITSVRGDVESSVMLDGQMRLFNAQTLDQQGESIVVQLPTLPTLPPLQEMKRCPDADWFNKAKTNLKEEENWEFIGSSTFREPKVTSKVEDRRIVTMSKINRRLTATEICAEINSSREKPVCVSTIKHRLLQHNLRGCVAVKKPLLRKQNKTKRLQWAISHKDWTFADWSKVLWTDELKFEICGSKRRTFVRRTPQEKMLEQCVVPTVKHGGGSVMVWGSFSANGVGDIVKIDGILRKEQYNNILIRHASDSPMLESDGQVLELPDASPGQSRQPSKKSLPHKKRISRKLKRNTGNTTPQQDIVVISCNDEVPQEEILPDSFVAHAGPHAAHLAHDTHHITHEVRPVLICSLCGEYYGEEQLKFYQHLKQHYEPHATIIIENPVSDLGIDKMTNTCIEDNVATLPDSIVELSLENTVPKTMYQTMDKHIMYTSSEKTLHYSKLQYSMASEKEPASEVEKTDLYDTLDKLEIYNCMKCSKSFRKQKQCEAHIKEMHGNGKLEDMGEFSEPEDLMEGIHVAVEGVGEGEGEGGDGEGAEGYDPAAALLPHLTVENGTVHQDHVRHWYMRGNQAVGCSADAYCPVCPRAPAPAHISHDAHSSAHSSHDAHATHDTHAPHDTQLKEEVFQRIFDVEVPTTENSNFTENIIPDAELPEPEKPEEKPEKGKKAGKSFECPQCGRVFQHRNSLLYHVLSHKGKQHVCRECNKGFYTSGALKIHKRVHNGDRPYKCEECDREFRQWSDLKYHKVSLHSNQKHFKCEFCGKEFARKYSLSVHRRIHTGERNYKCEYCNKSFRASSYRLSHMRTHTGDKPFKCTQCGKCFRVAGDLRRHSLTHDKHAHRADKLVKVKQEHDKSPKKDKKEKEQKSKKVAAASTTKLPILKSILDRKSPKNKKDVIKKIGAPNVTVNPNKEEGQFKINNEFTNNVEVFDTRHYKFKEIYVSKDEQMRQYDLEDERLPDERNFAVLKPMFRTANDSVEAEKIYPNRTENTDGKMAVFIEKKEYGGSIVSNSQVTLSDIRHLEREVRDVRSDSINGEAIENGLLERLAALYNIPAV*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -