Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990303.1:2044754-2051746[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.16 18 7.7 0.6 1 23 341 363 341 363 0.96

2 10 8.7 9.8e+02 2.2 0.3 3 23 387 408 385 408 0.91

3 10 0.56 63 5.9 0.0 2 23 431 452 430 452 0.93

4 10 0.076 8.6 8.7 1.3 1 23 456 478 456 478 0.96

5 10 0.0045 0.5 12.5 1.7 1 23 484 507 484 507 0.85

6 10 0.071 8 8.8 1.1 2 23 514 536 513 536 0.91

7 10 6.7e-06 0.00075 21.4 1.4 1 23 542 565 542 565 0.98

8 10 8.8e-05 0.0099 17.9 1.8 1 23 571 593 571 593 0.98

9 10 7.6e-07 8.6e-05 24.4 1.8 1 23 599 621 599 621 0.99

10 10 8.8e-07 0.0001 24.2 2.7 1 23 627 649 627 650 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.16	18	7.7	0.6	1	23	341	363	341	363	0.96
2	10	8.7	9.8e+02	2.2	0.3	3	23	387	408	385	408	0.91
3	10	0.56	63	5.9	0.0	2	23	431	452	430	452	0.93
4	10	0.076	8.6	8.7	1.3	1	23	456	478	456	478	0.96
5	10	0.0045	0.5	12.5	1.7	1	23	484	507	484	507	0.85
6	10	0.071	8	8.8	1.1	2	23	514	536	513	536	0.91
7	10	6.7e-06	0.00075	21.4	1.4	1	23	542	565	542	565	0.98
8	10	8.8e-05	0.0099	17.9	1.8	1	23	571	593	571	593	0.98
9	10	7.6e-07	8.6e-05	24.4	1.8	1	23	599	621	599	621	0.99
10	10	8.8e-07	0.0001	24.2	2.7	1	23	627	649	627	650	0.96

Sequence Information

Coding Sequence: ATGTACAACTCTCCGAATCGGCCCCGAGTGCCAGGCGGCCCTGGGGGATCCGGTGACGACGGTAGCCAGAATACCCCTGGGGccaggggtgctaagaatctcCAGGCGACAATTGGTTTCCCTTCCCGTCAAACGACTACGGCATGTAAAATGGACATCGACACTATACATGTTTTAACATACAATGTTCGGACTGTATCATCAAATGAAAGACTTATTGAGCTAGAAAATGCCATCAAGGACATCAAATGCGACATAATAGGCCTGTCAGAGGTGAGAAGACAAGGTGAGGAGACAGAGGAAAGGGAAGGTTGCTTATTCTACCACTTTGGAACTACCAGCACACAATATGGTGTGGGGTTTCTGGTGGCTAAGAAGTGGAAGAATAACGTCATCGAATTCCGCAGCTACTCCGACCGGATTGCCGTTCTTAAATTTCAGCTAACAGCTAAACAAACCCTGACGGTGATACAGGTCTATGCCCCAACATCCGCGCATAGCGACGAAGACTTGGAAGACTTTTACGACCTTCTCGACAAAGCTTGCGATGAACACCGAGGGTCTTGGAATATAATCCTCGGTGATTTCAATGCCAAATTAGGCTCCAAACAAAAACCGGATAACAATGAAATTTTAGGTCCGCACGGACTGGGAGGCCGAAATATGCGTGGTTCTCGTTTAATCCAGTTCGCGTTTGGACAAAGCTTAAAGGAAGAGGGGGAGGAAGAGACTATACCCTCTAAACCCACTCCGCTGCCGTTAAGGGAATGCCATGGGGTCGCGACGCCATGTGTGGATACCCTAGCGCCGTCTCATCTGAGCACGACATCCTTGAGGACAGGTGTAGCGGCAGATGCAGCAAGTACATCAGTAGCCAAGAAATCGccgaaagtaataaaaaaaccgcCTGTAGAGAAGAAAAACACCTACGACAGAGACTTAGACTGCATGTCAGAAGAGAACCTACTAACAATCATAGAGTACTCCTACGTATGCCCCTTCAAGAACAGAAGAAACAACTACTACTGCTTCTACTGTAAGGACTACTACGCGAAACCAGAAGACCTCAGGGCGCATACTGTGTCTCATGATACGAAACCATTCCAACTACTCATGGGCTACAAGAAAATGCCCAAAATAGATATCACCAGGATCGACTGCCGTCTCTGTACGACTAAAATAGACGACTTAAACACATTCAAACAGCACATAGACCAAATACACGGAAAGAAGATTTACTTCGAGGCCCCAGACAAGATGCTTCTGTACCGTTTGACCTGGAACGACTTAGTGTGTGTTATGTGTAGTGATGTGTTCGAGGATTTCAATGCGTTGAACACCCATATGGTGGAACATTTCAGTAACTTCACGTGTGATATGTGCGGGATGTGCTTTTTGGAAAAACCGCGCCTCGATGCTCATTTGAAGCGTCACAAAGACGACGAGCGACACACTTGCGAAGTATGCGGTAAGGTGTTTAAATCTAATCATTACAAAGATATGCACGTTGATATAGTCCATAAGAAGAAGGCTATAATACGCTGTCCGCGTTGCGACGAGTGTTTCATGTCGTACGCTttaaaaaacaagcatttaacCGAAGCTCATGGTCAGAAACGTACATATCCTTGCAATTTGTGTGACAAGATTTACAATAGACAAAAGACGCTCACAGAACATCAACGGAGGAATCATCAGAAGGTGCTCAAACATCAGTGCGAGTATTGCGACCAGCGGTTCTACCTTCCTTCGCGTTTGAAGGAACATATGGCGACTCATACGGGTGAGAGGAACTTTAGATGTGAATATTGCGATAAGAGTTATCCGCGGTTGAAATCCCTGCAGTATCATATTAGGACTCACACGAACGACCGTCGGTATCGATGCCATATATGCGGGCAGGCGTTTATACAGAATGCCAGCTTGAAGTCGCATATAAAGAGCCATCATCCCGAGTGCGATATCGAGCAATGCTATTTTTAG
Protein Sequence: MYNSPNRPRVPGGPGGSGDDGSQNTPGARGAKNLQATIGFPSRQTTTACKMDIDTIHVLTYNVRTVSSNERLIELENAIKDIKCDIIGLSEVRRQGEETEEREGCLFYHFGTTSTQYGVGFLVAKKWKNNVIEFRSYSDRIAVLKFQLTAKQTLTVIQVYAPTSAHSDEDLEDFYDLLDKACDEHRGSWNIILGDFNAKLGSKQKPDNNEILGPHGLGGRNMRGSRLIQFAFGQSLKEEGEEETIPSKPTPLPLRECHGVATPCVDTLAPSHLSTTSLRTGVAADAASTSVAKKSPKVIKKPPVEKKNTYDRDLDCMSEENLLTIIEYSYVCPFKNRRNNYYCFYCKDYYAKPEDLRAHTVSHDTKPFQLLMGYKKMPKIDITRIDCRLCTTKIDDLNTFKQHIDQIHGKKIYFEAPDKMLLYRLTWNDLVCVMCSDVFEDFNALNTHMVEHFSNFTCDMCGMCFLEKPRLDAHLKRHKDDERHTCEVCGKVFKSNHYKDMHVDIVHKKKAIIRCPRCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKIYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGERNFRCEYCDKSYPRLKSLQYHIRTHTNDRRYRCHICGQAFIQNASLKSHIKSHHPECDIEQCYF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -