Atur046845.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apotomis turbidana
Gene Symbol
X-element\ORF2
Assembly
GCA_905147355.1
Location
LR990302.1:15791597-15804018[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2.8 3.1e+02 3.8 0.5 1 23 192 215 192 215 0.92
2 17 0.00017 0.019 17.0 0.6 2 23 221 242 220 242 0.97
3 17 0.00013 0.015 17.3 1.2 2 23 273 295 272 295 0.96
4 17 0.0023 0.26 13.4 0.3 1 23 388 411 388 411 0.93
5 17 0.085 9.6 8.5 0.9 1 16 415 430 415 432 0.91
6 17 0.026 2.9 10.2 2.3 1 23 445 468 445 468 0.96
7 17 0.053 6 9.2 0.5 1 23 473 496 473 496 0.93
8 17 0.0014 0.16 14.1 0.5 3 23 510 530 508 530 0.96
9 17 0.0019 0.21 13.7 0.7 1 23 536 558 536 558 0.97
10 17 2.7 3.1e+02 3.8 0.8 2 23 567 587 566 587 0.96
11 17 0.00053 0.059 15.5 3.4 1 23 597 619 597 619 0.97
12 17 0.41 46 6.4 0.0 2 23 624 644 623 644 0.95
13 17 0.037 4.2 9.7 0.1 1 23 660 682 660 683 0.96
14 17 0.00031 0.035 16.2 1.1 1 23 689 711 689 711 0.98
15 17 7.2e-05 0.0081 18.2 3.4 1 23 717 739 717 739 0.97
16 17 0.00035 0.04 16.0 0.2 1 23 745 768 745 768 0.96
17 17 0.15 16 7.8 0.3 2 23 774 796 773 796 0.95

Sequence Information

Coding Sequence
ATGGAAGAACCCGACGCCTCAGTTACAGTTGAAACAGAAAATCCAGAAGTAATCATAACAATGAAAGATTACAACGACTTTGATTATATCAGGGATAATCTGAAAAATGTTTTGTATGCGCCACAATTCTGTGGTATCTGCCTTGCAGCCAGTGAAGACTTGTGTCCCATTTCAATGGAACTGGAAGTTGTGACACATACTACCGAAGTTAAAATTCTGGAAGATATTGTTTGCTACATCTTTAATAATAGCGTAAAAGATGTCCTATCCAGCTCATACATGTGCAATGCTTGCATTGATAATGTTCTACCATGCTATATCTTCATACACAACACCAGAAACTCATTTAAAATCATCAACAACTGCATCaatgaattaaattataaaGCGGTAAATGCTATGGACCAGTTGAATCCtacaaataattatgaaaactctGAAGTACTAATTATATTAGAAAATATGGATGCTCCTTACCCCGAGTCTGTAGCAAAGGAACCTAAAGTTAAAAGTAATACTGTGACtgtaaagaaaaagaaaatgaaaaagaaaacttacAAAAAACATGCTGGGTACCGGTGTGTTGAATGTAACATTATTGTTCAAACTTTTAAAGACTGGAAGCAACATGAGAGAGATTTTCATGAAAAACCACAAATTCAGTGTCAGATTTGTAACAAAGTTTTAAGCACAGAGCAAAGCTTGAAAGTCCATTACAAAACGCATGCCATGATGAAATGCAAAATTTGTCAATTACTTGTACCAGATGGAGATTTAAATGAACATTTCAGATTAAACCATGAAGATGATAAAAAGACTTGCCATATATGCAACATGGTCTTTTACACCAACAGTGAGATTAATGCACATATGAAGATTAGTCATCCTGATGCTGATGACCCTTACCCATCGAGCGACAAGGCTCAATGTCTCATGTGCCTAAGACATTTTGAAGGAGATGAGCTAAATGAACATAAATGCAAGTTTAGGTGTTCAGAATGCTTGGAAATTCCTTGCATCCATCACAAGTACTTGCTTTCTTACAGAGATCAAATTAAAGCCAGAGCTTCAAAGATAAAATGTATAGACTGTGATTATGTTTGTCACAAGAAAGATTTTCTCATTGGGCATGCAAATCGGGAGCATTTGGATCATATATCCTTTGCTTGTGATATTTGTGGTCAACGCTTCTATTCGAAAGTTGGCCTCCGAGGTCATATCTATCAATTTCACACAGAAAGCTACATATGTGAATACTGTGACCAAGAGTTTAAGAACAGCTCTACCTACTTTGAGAACCATAAGAAGCAATGTGCACAGGTTGAAAGAGAATTCAAATGCAATGAATGTCCTGCCTCTTTTGAAACCTTCAAATTCCTTTCTAACCACAACAAAAGAAGGCATATCCAGGAGATTTACCCTTGCAATCTGTGCACCAAGACATTTTTGACTGAAGGTAAACTGAAAGAACATACAGTCAAAGTGCATAGTGGCTTACAAAATAAGAACAAAAGATTTTTCACTGACtgtgttatttgtatgaaaaaattcgATACTAGAGCAGATTTAAGACGGCATATCAAAATTCACGGACCGGATGCAAAGTTCCCTTGCAGGGCCTGTAATATAGAATTTGACTCTCAAAAGCAACTGCAGGTCCATAGAAGGAAGCATGTGAGGTCATATTGTGAACGGGTGCAATGTTCTGTTTGCAACATGGAACTACAGGCAGTCTGTTTATCTCAACACATGTTACGACATGCAGTTGAGTCAGGCCAAGCACCGGCTTTCAGTTGTGATGTTTGTGGGAAATCATGTTCCTCTAAGGTGTATCTGAAATATCATAAACTAAGCCACGAAGAACCAATACCATGCCCAGAGTGCAACAAACTGATCAAACCAGCAGGTCTTCAGAAGCATATCAAATACCATGGCTATAAAGATGACCCTGTCATGAGAGAGAAAATGAAACGGAAATATAAATGCGACTTATGCGATTACATAGCTTCTGATCCAAGCATTTTAGAAGCACATGTCAATCGTCACCATTTAAAAGTGAAACCATACATCTGCTCAATTTGTGAAAAAGATTTCTGCGGAAAATTGCAACTCGCAAGACACATGGACACTCATTATGTGACTAAACATTTTAATTGTGAGATTTGTGATAAGaaattttctaataaaatttgTCTACGGATGCATCTTAGACTGCACACAGGGGAGAGGCCATACTACTGTGAAATATGTGCTGAAAGCTTTATCTCAGCAAGTGCACTGAAAACTCATAGAATCAAGCGGCATTCAGAAAAGACAATTCCCTGTCCATTCTGTAACAGAATGTTTTATATAGCAGTGGAAATGAGACAGCATTTCAAGAAATACCACTGGCCACATAAGGATAGGAAATTTGACCATAGAGAAGTAGAGGGGCTGGGCAGAGAGTTTTACCATCTATTTGAAGATGGCAGAAGACCCAGGTTGGATGACAATACATATGATAGCAAAGAATATGAGAGTAGTAGCAATATCATTATTGAGGAAGCAGTTGATGTCCCCATCGTCGAGTTGCCCACTGTCACGCACGACGACCTTGACCGCATTCTTAGGTCAATGATGAAGACCCGAACCACCCTCGACATACATGACATATCTGTCAACATAATGTTATGTATTTGGCCAACACTATCTAATATCCTTGTTATCTTAGTCAACGAGATGTTCTCAACTGGTATCTACCCTGATATACTCAAATGTACAAGGGTATGCCCTGTGTTCAAAAATAAAGGGGAGAAAACATCAGTAGACAATTACAGGCCTATATCGATAGTACCTAATATCTCAAAAATGattgaatcgattttatcgcAACATCTAATGCATCACCTCGAGATCAACGACTTACTGACCAACAGACAGTTCGCTTACCGTCAACACAGGTCTACTGTCAATGCAGCGCAGTCAATGGTCGACTACATTACTACAGGCATTGACGACAAATTTAAAATAGCTGGCATATTCTGTGATCTCTCTAAAGCCTTCGATGTCATAAGTCATGACctacttatcaaaaaattatcacAATACGGCCTACAGGGACGGGGAAGTGACCTACTGCTATCTTTTTTAAAAAACCGAACTCAGACAGTAGAGGTAACGTCAGGCGGAAAAAGATTGCGGTCTAGGCCAGGTAGCGTGACGGTCGGGATACCACAGGGATCCGCGCTCGGAAATACTCTCTTCCTGGCGTTTATAAATGACCTGCCAGCGGCCGTAACGGAAGGACAAATAGTTCTGTTTGCTGATGACACGACGGTTGTAGTAAGTGCTCGTACCTATGAGCAACTCAGCGTGAAAATCGTCGCAGCATGCGACCAGTTCAAAGAATGGTTCACAGCAAACGGACTGATACTCAACACCAGCAAGTCCAACGTTATGATGTTCTCTGGCAGGCGCGTACCGGGCGCGAGTATTCAATGTCCTATTCCGATGAGCGACCAATGCCGGTTTCTAGGTCTTACGTTGGACCCCACCTTAAGTTGGAAGCAGCACGTGGACTCACTGTGTATTAGGCTAGGCAGTGCTGTATTTGCTCTACGCAAATTAAAGCCATTAGTGTCCAGTGATGCACTGCGACAGGCTTACTTCGCTTATTTTCACTCGCTTATGACCTACGGTGTTATTCTTTGGGGCAATTCTACTGACGCCGACAGGCTAGatttaaaaaatgcttttaacagcGTTGAAAGAGATATCTTGCTAAACGAGGTTTTAGATAACGTGCCGTCTCTCTACCcctttttgtatcaatgttatTCTGGTAGCACCAATTTATACCTCAAAGAGAACCTAATATCATCGCAAGTTGGAGCTCAACAGGGTGATCCTTTAGGTCCTCTAGTTTTCTGTCTGTCAATACAAAAGGCTATCGTTACATTGAGCTCGCCTCTCAATGTGTGGTACCTTGACGATGGTACAATCGGCGGAAGACCAGAAACAGTGATAGAGGACCTGAAGAGACTCATCCCTGTTTTGAAAGAGGTGGGTTTAGACGTTAACCCAACCAAGTGCGAGCTTTATAGTTGCGGTCCTATTTCAGACTCTTCATTGACAGAATTAAAACAGCTTTTACCGGGGATTAGGACCATAAACAAAGAAACTTTTTCCTTACTAGGTGCTCCTATATTCCCTGAAGGAGTCAAGGCTGCTCTGCAGTTAAAAAAAGATGCTTTAGTCGGAGTTCGTGAACACCTTTCTAAAATGTCATCCCATGTCTCAATAACCTTATTACGAAATTGTTTTGCTACACCCCGGATGACCTATATCCTCAGAACTACTCCACTCTGGTTATATATGGATGAAGTAAAAGAAATTGACCTAGAACTAAAATTTACTTTAGAGATGATATTAAATGTGGGGTTAAGTCAGTCACAGTGGGTTCAGGCTACACTTCCCATACGATTTGGAGGGCTAGGCATTCGTCGCGTTCAGGATGTCGGGATTGTTGCTTATCTTGCGTCGTCACACGGAACAGGAGATCTTGTCACTCGTATATTATGCTCTGACGGTGGCAACGTTTCAGTTCCTTTTATGACGGAGGCTCTGACAAAATGGTCCATGGTTTTCCCAGACGGCGAGCTACCCGAAAACCCTATCATCCAAAGGCAGTGGGATGACATATTTAGCAAACATATTTACGATTCCCTCGTGGAAAGTGCTCTGGAGGCTGACTTGGCACGCCTTAAGGCAATCGTACGACCAGAGTCAGGGGCATGGTTGCACGCCTTGCCGTCGCCTCAACTTGGCACCCTGTTAGACAACGATACTTTAAGAATAGCCGCAGCGCTCAGGTTAGGCGCAAAAGTATGCGAAGCTCATCGTTGTCGCTGTGGAGTAACGGTAGAAGAAAATGGCCATCACGGCCTCAGCTGTCAACGGTGTGCCGGTCGGTTCCCAAGGCACCACTCAATTAATGAAATCATCCGTCGCgccatggtttcagttaatGTGCCTTGTATTTTGGAGCCACCAGGTTTAAGCCGCACAGACGGTAAGAGACCGGATGGCCTAACCCTTATACCTTGGCGCAGAGGACGCTGCCTCCTATGGGATGCAACTTGTGTCAGTACATTTGCTGCATCCCATTTGAGACAAACTTGTCGGTATGCTGGCTCCGCGGCGGAAAATGCTGCGAAATTAAAACACACCAAGTACTCCGCTCTAGAGCCAGCATACGAGTTTGTACCAGTCGCTGTGGAGACAGCAGGACCATGGAGTCTTGAAGCCCGCAATCTGTTTAGGGAGCTTGGACGACGACTAAGGGACAGGGGCTGCGATCCCCGCTCTGGCTCCTATCTGGTTCAGCAGGTGTCCatagccattcagcggggcaacgCTGCTGGTATTATGGGGACCTTTGAGCCGGGTATAATGCAGGGCGGGCTCTTTTAG
Protein Sequence
MEEPDASVTVETENPEVIITMKDYNDFDYIRDNLKNVLYAPQFCGICLAASEDLCPISMELEVVTHTTEVKILEDIVCYIFNNSVKDVLSSSYMCNACIDNVLPCYIFIHNTRNSFKIINNCINELNYKAVNAMDQLNPTNNYENSEVLIILENMDAPYPESVAKEPKVKSNTVTVKKKKMKKKTYKKHAGYRCVECNIIVQTFKDWKQHERDFHEKPQIQCQICNKVLSTEQSLKVHYKTHAMMKCKICQLLVPDGDLNEHFRLNHEDDKKTCHICNMVFYTNSEINAHMKISHPDADDPYPSSDKAQCLMCLRHFEGDELNEHKCKFRCSECLEIPCIHHKYLLSYRDQIKARASKIKCIDCDYVCHKKDFLIGHANREHLDHISFACDICGQRFYSKVGLRGHIYQFHTESYICEYCDQEFKNSSTYFENHKKQCAQVEREFKCNECPASFETFKFLSNHNKRRHIQEIYPCNLCTKTFLTEGKLKEHTVKVHSGLQNKNKRFFTDCVICMKKFDTRADLRRHIKIHGPDAKFPCRACNIEFDSQKQLQVHRRKHVRSYCERVQCSVCNMELQAVCLSQHMLRHAVESGQAPAFSCDVCGKSCSSKVYLKYHKLSHEEPIPCPECNKLIKPAGLQKHIKYHGYKDDPVMREKMKRKYKCDLCDYIASDPSILEAHVNRHHLKVKPYICSICEKDFCGKLQLARHMDTHYVTKHFNCEICDKKFSNKICLRMHLRLHTGERPYYCEICAESFISASALKTHRIKRHSEKTIPCPFCNRMFYIAVEMRQHFKKYHWPHKDRKFDHREVEGLGREFYHLFEDGRRPRLDDNTYDSKEYESSSNIIIEEAVDVPIVELPTVTHDDLDRILRSMMKTRTTLDIHDISVNIMLCIWPTLSNILVILVNEMFSTGIYPDILKCTRVCPVFKNKGEKTSVDNYRPISIVPNISKMIESILSQHLMHHLEINDLLTNRQFAYRQHRSTVNAAQSMVDYITTGIDDKFKIAGIFCDLSKAFDVISHDLLIKKLSQYGLQGRGSDLLLSFLKNRTQTVEVTSGGKRLRSRPGSVTVGIPQGSALGNTLFLAFINDLPAAVTEGQIVLFADDTTVVVSARTYEQLSVKIVAACDQFKEWFTANGLILNTSKSNVMMFSGRRVPGASIQCPIPMSDQCRFLGLTLDPTLSWKQHVDSLCIRLGSAVFALRKLKPLVSSDALRQAYFAYFHSLMTYGVILWGNSTDADRLDLKNAFNSVERDILLNEVLDNVPSLYPFLYQCYSGSTNLYLKENLISSQVGAQQGDPLGPLVFCLSIQKAIVTLSSPLNVWYLDDGTIGGRPETVIEDLKRLIPVLKEVGLDVNPTKCELYSCGPISDSSLTELKQLLPGIRTINKETFSLLGAPIFPEGVKAALQLKKDALVGVREHLSKMSSHVSITLLRNCFATPRMTYILRTTPLWLYMDEVKEIDLELKFTLEMILNVGLSQSQWVQATLPIRFGGLGIRRVQDVGIVAYLASSHGTGDLVTRILCSDGGNVSVPFMTEALTKWSMVFPDGELPENPIIQRQWDDIFSKHIYDSLVESALEADLARLKAIVRPESGAWLHALPSPQLGTLLDNDTLRIAAALRLGAKVCEAHRCRCGVTVEENGHHGLSCQRCAGRFPRHHSINEIIRRAMVSVNVPCILEPPGLSRTDGKRPDGLTLIPWRRGRCLLWDATCVSTFAASHLRQTCRYAGSAAENAAKLKHTKYSALEPAYEFVPVAVETAGPWSLEARNLFRELGRRLRDRGCDPRSGSYLVQQVSIAIQRGNAAGIMGTFEPGIMQGGLF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-