Atur050481.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:6530166-6551523[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 1.3 11.3 0.0 1 23 214 237 214 237 0.96 2 17 0.024 2.7 10.2 3.4 1 23 244 266 244 266 0.97 3 17 0.0024 0.27 13.4 1.3 1 23 323 345 323 345 0.97 4 17 0.0066 0.75 12.0 1.3 3 22 357 376 356 380 0.90 5 17 0.0042 0.48 12.6 2.8 1 23 420 442 420 442 0.97 6 17 0.0042 0.48 12.6 2.8 1 23 450 472 450 472 0.97 7 17 0.0042 0.48 12.6 2.8 1 23 480 502 480 502 0.97 8 17 0.0042 0.48 12.6 2.8 1 23 579 601 579 601 0.97 9 17 0.0042 0.48 12.6 2.8 1 23 678 700 678 700 0.97 10 17 0.0042 0.48 12.6 2.8 1 23 777 799 777 799 0.97 11 17 0.0042 0.48 12.6 2.8 1 23 876 898 876 898 0.97 12 17 0.0042 0.48 12.6 2.8 1 23 975 997 975 997 0.97 13 17 0.019 2.1 10.6 0.3 3 21 1007 1025 1005 1030 0.89 14 17 0.00082 0.093 14.9 0.6 1 23 1038 1061 1038 1061 0.91 15 17 0.07 7.9 8.8 7.1 1 23 1067 1090 1067 1090 0.95 16 17 0.00045 0.05 15.7 2.1 3 23 1099 1120 1097 1120 0.91 17 17 1.9 2.1e+02 4.3 3.2 1 23 1126 1149 1126 1149 0.98
Sequence Information
- Coding Sequence
- ATGGCAGCTCAGCGGCGCAATTTCTGCTGCGGCTGCCTTCTTGAAGGCCGAAAATTGATACCAGTTGACGAGTTTTGTTTAAAGCAGTGTTTCTTGCAAATTATAAGCGAAATTCCTACATGCCAACCGGAAAATGTTCCCATAGATTTGTGCTGGGAATGCGAGGCGCTGGTGCGGCGCTTCGCTGAGTTTAAGCAACAAGTGAAATATTCCTACATTACCCTTCAAGAGTGCAGAGAATGgAAACCAGACATCAAACTGAACAGAACACCGAAACTAAAAGTTCACAATCAGTACAATATTAACTACCCAGACATCGAACCAGACGCACAGACAACTACCAATACAGACCAGCTCTCCGTACCACtaactatagaaataaaagTAGAATCATCAAGGAACCAAGTCAAATCTGAAATAGAATCAGTTTCGGACCACGATAACGAAGATGATTTACTTATAAGTTacgtaacaaaaaagaaaaaggctgttaaacggaagaaaaaaacaCCGGAACCATGTAAAGAAATAGATTTGATCAAGGAAACTGAAAAGTTTAAAGAGATTGAGTTGACGGAGAGTGAGATAGAGGAAGAGAGACGGGAGATGGGGACGAGGGATGAGTATGTGAACGCTATGTTTCGGTGTGAGAACTGTATCGTGTCTTTTCCGAATGCTGACGATTTGAAGGATCACATTGCTGTCAAACATGAGCTGAACGCCGCACACCACGTGTGCCCGATATGCACCTGTTCCTTCGCCTCAGAGATCTCTTACAACTACCACAGAAATAAACACAAAAAGCGGTACCACTGCTGCGTCTGTAATTCGCGGGCGAGGAGCAAACGCGCTGCGCAGAAACACTATGAGACTACACATGGGATAGATCCGACATACGAGAACCACGTGGAAAGTAATCAGACTCAGGATGCTACTAGTACAAATGAAGTGAAGTCGGAAGGCAGTTTTCCCTGCGAGCAGTGCGCCAAGACGTTCAGATGGAAGACCTCGCTGCGGAAGCACCTGGAGAAGCATCGGATCGACGCCGGCCAGAAGCGGAGACCCTACTGCGAACCTTGCAAATTATCCTTCACAACAACTTCGAACCTTCAGAAGCACGTCAAGACGAGCTCCAAACATCAGATCCAGTTAAAACTTAGAAAGCTAAAAGACACGCTGCCCGAAGACGCGGCCCCAGAGAAGCAGCAAGCGCATATCGAGGAGATCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGACAAGTGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGGTGAGTGAACACGCGACAAGCCCAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGGTGAGTGAACACGCGACAAGCCCAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGGTGAGTGAACACGCGACAAGCCCAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCTGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGGTGAGTGAACACGCGACAAGCCCAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGGTGAGTGAACACGCGACAAGCCCAGACAAGCGGCCAGCGCGCATAGAGGAGGTCAAGTGTTCCGTGAACAGCGCGCGCCAGCAGTTCCCGTGCGCGCACTGCGGGAAGCGGTTCCAGTGGCGCGGGAACCTGCTGCGGCACCTGCACAGCCACGCGGCGAGAGCGAACGGCGAGCTAGTGTGCGCCCCGTGCAACCGCACGTTCTCGTCGCTGGCGACGTACAAGCAACACATGCGGCTGTCGCGCGCGCACGTGTCCGAGCAGGAGTGGCAGCACCAGTGCGCCGAGTGCGGCCGCCGCTTCGCCAACAAGACGCGGCTCCGGGACCACGTCGACTGGGACCACAGGAGGCACTTTGCGCACCATTGCAGTCAATGCcagaagGTGTTCAAGAGCCACACGTCCCTGTACCTGCACAAGCAGGTGGTCCACAAGAAGGAGAACGCCGAACACCTGTGCGACCACTGCGGCAAACCGTTCCCGAACCACGCGAAGCTACGCAGCCACATCATAGCGCTGCACACGTCAGAGTCTCCCTACAAGTGCAGCGCCTGCGCCGCGCGGTTCAGCTGGCACTCCTGCCTCTCCCGCCACGTCCGGAGAGTACACAAGCGGAAGTGA
- Protein Sequence
- MAAQRRNFCCGCLLEGRKLIPVDEFCLKQCFLQIISEIPTCQPENVPIDLCWECEALVRRFAEFKQQVKYSYITLQECREWKPDIKLNRTPKLKVHNQYNINYPDIEPDAQTTTNTDQLSVPLTIEIKVESSRNQVKSEIESVSDHDNEDDLLISYVTKKKKAVKRKKKTPEPCKEIDLIKETEKFKEIELTESEIEEERREMGTRDEYVNAMFRCENCIVSFPNADDLKDHIAVKHELNAAHHVCPICTCSFASEISYNYHRNKHKKRYHCCVCNSRARSKRAAQKHYETTHGIDPTYENHVESNQTQDATSTNEVKSEGSFPCEQCAKTFRWKTSLRKHLEKHRIDAGQKRRPYCEPCKLSFTTTSNLQKHVKTSSKHQIQLKLRKLKDTLPEDAAPEKQQAHIEEIKCSVNSARQQFPCAHCGKRFQWRGNLLRHLHSHAASARQQFPCAHCGKRFQWRGNLLRHLHSHAASARQQFPCAHCGKRFQWRGNLLRHLHSHAARQVASAHRGGQVFREQRAPAVPVRALREAVPVAREPAAAPAQPRGEVSEHATSPDKRPARIEEVKCSVNSARQQFPCAHCGKRFQWRGNLLRHLHSHAARQAASAHRGGQVFREQRAPAVPVRALREAVPVAREPAAAPAQPRGEVSEHATSPDKRPARIEEVKCSVNSARQQFPCAHCGKRFQWRGNLLRHLHSHAARQAASAHRGGQVFREQRAPAVPVRALREAVPVAREPAAAPAQPRGEVSEHATSPDKRPARIEEVKCSVNSARQQFPCAHCGKRFQWRGNLLRHLHSHAARQAASAHRGGQVFREQRAPAVPVRALREAVPVAREPAAAPAQPRGEVSEHATSPDKRPARIEEVKCSVNSARQQFPCAHCGKRFQWRGNLLRHLHSHAARQAASAHRGGQVFREQRAPAVPVRALREAVPVAREPAAAPAQPRGEVSEHATSPDKRPARIEEVKCSVNSARQQFPCAHCGKRFQWRGNLLRHLHSHAARANGELVCAPCNRTFSSLATYKQHMRLSRAHVSEQEWQHQCAECGRRFANKTRLRDHVDWDHRRHFAHHCSQCQKVFKSHTSLYLHKQVVHKKENAEHLCDHCGKPFPNHAKLRSHIIALHTSESPYKCSACAARFSWHSCLSRHVRRVHKRK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -