Atur050321.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:4960863-4978714[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.27 30 7.0 0.3 1 23 209 231 209 231 0.98 2 22 0.0015 0.17 14.0 0.6 1 23 238 261 238 261 0.95 3 22 0.28 32 6.9 0.6 1 23 265 287 265 287 0.98 4 22 0.91 1e+02 5.3 0.3 1 23 319 342 319 342 0.90 5 22 0.91 1e+02 5.3 0.3 1 23 375 398 375 398 0.90 6 22 0.91 1e+02 5.3 0.3 1 23 431 454 431 454 0.90 7 22 0.91 1e+02 5.3 0.3 1 23 487 510 487 510 0.90 8 22 0.91 1e+02 5.3 0.3 1 23 543 566 543 566 0.90 9 22 0.91 1e+02 5.3 0.3 1 23 599 622 599 622 0.90 10 22 0.91 1e+02 5.3 0.3 1 23 655 678 655 678 0.90 11 22 0.91 1e+02 5.3 0.3 1 23 711 734 711 734 0.90 12 22 0.91 1e+02 5.3 0.3 1 23 767 790 767 790 0.90 13 22 0.91 1e+02 5.3 0.3 1 23 823 846 823 846 0.90 14 22 0.91 1e+02 5.3 0.3 1 23 879 902 879 902 0.90 15 22 0.91 1e+02 5.3 0.3 1 23 935 958 935 958 0.90 16 22 0.91 1e+02 5.3 0.3 1 23 991 1014 991 1014 0.90 17 22 0.085 9.7 8.5 0.0 2 21 1030 1049 1030 1054 0.92 18 22 0.0012 0.13 14.4 0.2 2 23 1099 1121 1098 1121 0.96 19 22 5.4e-06 0.00061 21.7 1.4 2 23 1131 1152 1130 1152 0.97 20 22 2.1e-05 0.0024 19.9 0.8 1 23 1158 1180 1158 1180 0.99 21 22 5.1e-05 0.0058 18.7 5.4 1 23 1186 1208 1186 1208 0.98 22 22 7.8e-07 8.8e-05 24.4 1.9 1 23 1214 1237 1214 1237 0.98
Sequence Information
- Coding Sequence
- ATGTCTCAGTTATTGCTGTGCAGAGTGTGTCTAGCCAGTAACGTGACTGTTTACAATATACTGAACTCCTGCCTTCAAGAAATGTACGAGAAACTAACTAGGCTACCGCTGCATGCAGACGATGGTAAACCGAGCACAGTTTGCTACATTTGCCTGGCGCTACTCCGGAAGAGTTACCAGCTGTGGGTGCAGTCCGTCACTTCAGATCGGCTGCTGAGCCGGCTCCTCGCTACCAATGATGAGATAACACAAGAGTTGTTAGACCATGTGGACAGACAAGGCCACAAGTTGACCACGGCGTTCGTGGTGAGCTCGGAGCACCTGGACGTAACACCAGAAGCTGAAGCATCGGAGGACTTCAAGGAGTTGAAGCAGGAACCGGCAGggttctctTCAGACACGGATCAGGTATCCATCAAAGCAGACCAGTCTGACTCCGAAGACGACCTCCCACTCCAAGCTATCAGGCAGAACAAGACAGAGACAGCACCTGTGAAGAACAAGGACAAGGAATTTTTGAAAGGCTTCAAATCCGGCTACGCCCGCGAGCTGATCCTGACCAAGGAGCAGCAACTCTTGGAGCTCCAGGTGCGGGGCTCCTCCGTCAACTTCCTCAACGCGCCGTTCAAGTGCCAGCCCTGCCGCCGCGGGTACGTCGAGCCGGCCGCCTTCCGGAACCACCAGCTCAAGCACGATGTCAAATCCGGCGCCCACGTGTGCGACATATGCACGATGCGCTACAAGACGCCGCGCAAGCTGCGCGCGCACGTCGTCACCGCGCACGAGCGCCGCTACCAGTGCGCCACCTGTCCGCAGCGCTCGCACACCGCATCGCAGGCGCGCGAGCACGAGCGCTGGCACCTGGGGCACCGCTACGTGTGCCGGCTGTGCGGGCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCGCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCAGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGGTCTGTCAGTGTGTCTCTCTCCCTCACGTGTCGCGCGCGTCCACGTCGCACCTCACGCACATGCGCGCGCGCCACCGCACGCAGCACACGTGCGCGCTGTGCGGGGACAGCTTCGTCGGCGCGCACGGGCTCAGGATGCACGAGGGGAAGGCGCATAGGGAGCCGCAGCCTGTGACAGACGATTCGCCCGCCTCGGAGCGATATTGTGACGAGTGTGACATTCAGTTCGCTACTATGGTCGCGTGGAAACGACATATACTGAGCGCCGCCAACCACGCGTTCGCCAAACACAAAGGCGTGTGCGTGATCTGCGGCCCCACGTGCCCCGGCGACGGCACGCACCTCAAGGAGAGCGTGAGGGCGCTCCGCCCCTCCAGCAAAGTGCCTACACTCCGAGCTTCCACACTCACTTGTGAACAGTGCGGGTCATCGTTCGCCAACGGCTCGAAACTACAAGCACACGTGAAACGGGTGCATTTGGGAGTGAAATACAACAAGAACGTCGTTTGTGAAGTATGCGGCAAAAGTTGCacaTCGAACGCTTCCCTGAAGTATCACCAGCGCACCCACACGGGCGAGAAGCCCTACCAGTGCGCGAGCTGCCCGAAGCGGTTCGCGGACAGCAACCAGCTGCGCATCCACACGCGGCGGCACACCGGCGAGCGCCCCTACTGCTGCCGGCACTGCCCGAGGACCTTCACGCAGAAGCCGGCCCTTAACAGGCATTACAGGGTCCACACGGGAGCCAAGCCGTACTCGTGCCAGTACTGTTCCAAAAGCTTCAGTCAGTCCAACTCCCTTAAACTACACATCCGGACAGTCCACCTTAAGATGCCCGGGAAAAAGCGACCGCAGGATGAGAAGAaagaacataatataattaCTGTTGAAAAGGCTTTAGAGTAG
- Protein Sequence
- MSQLLLCRVCLASNVTVYNILNSCLQEMYEKLTRLPLHADDGKPSTVCYICLALLRKSYQLWVQSVTSDRLLSRLLATNDEITQELLDHVDRQGHKLTTAFVVSSEHLDVTPEAEASEDFKELKQEPAGFSSDTDQVSIKADQSDSEDDLPLQAIRQNKTETAPVKNKDKEFLKGFKSGYARELILTKEQQLLELQVRGSSVNFLNAPFKCQPCRRGYVEPAAFRNHQLKHDVKSGAHVCDICTMRYKTPRKLRAHVVTAHERRYQCATCPQRSHTASQAREHERWHLGHRYVCRLCGHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVSQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQVCQCVSLPHVSRASTSHLTHMRARHRTQHTCALCGDSFVGAHGLRMHEGKAHREPQPVTDDSPASERYCDECDIQFATMVAWKRHILSAANHAFAKHKGVCVICGPTCPGDGTHLKESVRALRPSSKVPTLRASTLTCEQCGSSFANGSKLQAHVKRVHLGVKYNKNVVCEVCGKSCTSNASLKYHQRTHTGEKPYQCASCPKRFADSNQLRIHTRRHTGERPYCCRHCPRTFTQKPALNRHYRVHTGAKPYSCQYCSKSFSQSNSLKLHIRTVHLKMPGKKRPQDEKKEHNIITVEKALE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -