Atur049872.1
Basic Information
- Insect
- Apotomis turbidana
- Gene Symbol
- -
- Assembly
- GCA_905147355.1
- Location
- LR990305.1:1318241-1332286[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00037 0.042 15.9 0.3 1 23 254 276 254 276 0.98 2 12 0.2 22 7.4 1.6 1 23 283 305 283 305 0.94 3 12 0.45 50 6.3 1.7 1 23 361 383 361 383 0.92 4 12 0.00034 0.038 16.1 3.8 1 23 388 411 388 411 0.96 5 12 0.047 5.3 9.3 0.1 3 23 418 439 417 439 0.94 6 12 0.22 25 7.2 0.0 2 20 450 468 449 470 0.92 7 12 0.017 1.9 10.7 0.0 3 23 479 500 478 500 0.91 8 12 9.6e-05 0.011 17.8 1.8 1 23 505 528 505 528 0.97 9 12 0.00034 0.039 16.0 0.5 3 23 557 577 556 577 0.97 10 12 8.3e-06 0.00094 21.1 1.1 1 23 583 605 583 605 0.98 11 12 7.4e-05 0.0083 18.2 0.1 1 23 611 633 611 633 0.98 12 12 0.0015 0.17 14.0 1.9 1 23 639 662 639 662 0.96
Sequence Information
- Coding Sequence
- ATGAAAACTATAAAGGAAGAGTCCTTAAACCAGACGTTAAAGTTGCTCAGTTGCCGAGCTTGCTTGGCTACTGATGTTAAATTGTTTAATATACACGAAAACAAACTAGCCGATGGATTTGCTCATATCACAGGGACTCCTGTGCTGATTTTGGATGGGCTTCCCCAGCACCTGTGCTGTTACTGCCGCAGTGCTCTTCTCAAGTGCGGTGCATTTAGAGCCCGAAGTCTCCGAGCACAGCAGTGTCTCCAAGCCAGAATTCAGCATGAGCTAACCACAGACTACATTCGGACCATAGACCGCCACTACCACCAACTCCTCCACTTAACTCAAACCAGAGTCGAAACCACAGACTACAGAGACACTCTAGAAATAGAAGACATAAAGAAAGAAGAATCCGACACAGACCACATATTCTTAGAGAGTGAAGATTTGAAATTGGAATACGAAATAAAAGACAAAATAGATGAAAGCATAGATAATGATCATGATTTTAGTGACGATAATGTAGAACAAATATTTGTGGCTACAAATCCAGTGAAAGATGTGAAGGTAAGGAAAGGGAGAAAGAAGAAAGTGGAAGAGAAGAGAGTTAAAAAGAAGATTAAGAAGAGAACTTCagataatgattatttgccggATTTTGATTTTGCTAAGTTTGAAAGCAATTACAGTGTTGAGATTATTGCTTTGACTAAGGAACAGCAGCTGGAGGAGATACGGGCACGTAAACAGAGCGCGAACTACCAGTACGCGGCGTACAAATGTGAGGAATGCGGGAAAGGATTCATGGCGAACGATGCATACAACAACCACAAGATACGGCACAGCCCCAGTATGGGTGCGCACGCGTGCGAGATCTGCCTCGTGCGGTTCAAGCGGCAGTCGCGGCGCCAGGAGCACCAGGACCTGCACCGGCTGAAGTTCTTGTGCAAGGAGTGCAGCTTCGTGTCCAGGAACAGGAGTGCAGCTTCGTGTCCAGGAACAGGAGCACCAGGACCTGCACCGGCTGAAGTTCCTGTGCAAGGAGTGCAGCTTCGTGTCCAGGAACAGGAGCACCAGGACCTGCACCGGCTGAAGTTCCTGTGCAAGGAGTGCAGCTTCGTGTCCAGGAACAGGTATCAAGCGAAGAAGCATTTCGAGTGGCACTCGGGCAAGATTCACGTCTGCAAACACTGCGGCGCCAGCTTCACCAAGAGCTCAACGTACCTGTCGCACGTGCGTCTGCAGCACCCCGCCATGAACGTGGCGTGCGACGTGTGCGGGGAGACCTTCGTCGGACGGCTGGGGCTGCTGCAGCACAAGTCCAGGGCTCATCAGAAAATAGCGGCCCCGAGGCCCGAGTCGCGCTGCGCGTCGTGCGGCGCGCAGTTCGAGAGCGCGGAGGCGCTGAGCCGGCACGCGCAGGGCTCGTGCGACCCGCGCCACAGGCCCTGCTTAATCTGCGGCGAAACGTTGTCCAGCGAAGAGTTGCTTCAAGCTCACACGGAGGAGCGGCATCGTACGGACCAGTTCAAGTGTCTACAGTGTGACAAAACGTTCGCGAGCTCCGCGTCGTACGAGGTGCACCACCAGCGCGTGCACCTCAACGTGCGCTGGCGCAAGACGCGCGACAAACGCGCGGCCCGCGCCGCCAGCCACGACGTGCCCAAGCGGAAGGAGGCTATGTGCGAGATGTGCGGGAAAGCTTGTGAGTCGAACGCGGCGCTCGTGTACCACCAGCGCTCGCACACGGGCGAGCGGCCCTACAAGTGCTCCCAGTGCCCCAAGTGCTTCACCATGCCGCAGGCACTCATCAACCACCAGCTGGTGCACTCGGACGAGCGGCCCTACGTGTGCTCCGCGTGTCCGAAGGCCTTCAAGCAGAAGGTGGCGCTGCAGCTCCACAGTCGGGTGCACACCGGTGAGCGGCCGTACAAGTGTTCCCTGTGCGACAGCTCGTTCAAGCAGGGGCCGCATCTCCGCACCCACGTCAAGCTCATGCACAACGTGCCCGGCGAGCAGCGCCGCGCGAGGCGCAAGCTGTAG
- Protein Sequence
- MKTIKEESLNQTLKLLSCRACLATDVKLFNIHENKLADGFAHITGTPVLILDGLPQHLCCYCRSALLKCGAFRARSLRAQQCLQARIQHELTTDYIRTIDRHYHQLLHLTQTRVETTDYRDTLEIEDIKKEESDTDHIFLESEDLKLEYEIKDKIDESIDNDHDFSDDNVEQIFVATNPVKDVKVRKGRKKKVEEKRVKKKIKKRTSDNDYLPDFDFAKFESNYSVEIIALTKEQQLEEIRARKQSANYQYAAYKCEECGKGFMANDAYNNHKIRHSPSMGAHACEICLVRFKRQSRRQEHQDLHRLKFLCKECSFVSRNRSAASCPGTGAPGPAPAEVPVQGVQLRVQEQEHQDLHRLKFLCKECSFVSRNRYQAKKHFEWHSGKIHVCKHCGASFTKSSTYLSHVRLQHPAMNVACDVCGETFVGRLGLLQHKSRAHQKIAAPRPESRCASCGAQFESAEALSRHAQGSCDPRHRPCLICGETLSSEELLQAHTEERHRTDQFKCLQCDKTFASSASYEVHHQRVHLNVRWRKTRDKRAARAASHDVPKRKEAMCEMCGKACESNAALVYHQRSHTGERPYKCSQCPKCFTMPQALINHQLVHSDERPYVCSACPKAFKQKVALQLHSRVHTGERPYKCSLCDSSFKQGPHLRTHVKLMHNVPGEQRRARRKL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00148712; iTF_00773135;
- 90% Identity
- iTF_00148712;
- 80% Identity
- -