Basic Information

Insect: Apotomis turbidana
Gene Symbol: -
Assembly: GCA_905147355.1
Location: LR990280.1:4396682-4417754[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0032 0.37 13.0 5.7 1 23 173 195 173 195 0.99

2 11 1.9e-05 0.0021 20.0 0.5 1 23 201 223 201 223 0.99

3 11 0.00028 0.031 16.3 1.7 1 23 229 252 229 252 0.96

4 11 0.05 5.7 9.2 3.2 1 21 258 278 258 280 0.95

5 11 5.1e-05 0.0057 18.7 0.8 1 23 286 308 286 308 0.99

6 11 0.00011 0.013 17.6 3.3 1 23 314 336 314 336 0.98

7 11 0.00096 0.11 14.7 1.1 1 23 344 367 344 367 0.98

8 11 0.014 1.6 10.9 5.0 2 23 374 395 373 395 0.96

9 11 0.0015 0.17 14.1 2.1 1 23 401 423 401 423 0.98

10 11 2.3e-06 0.00026 22.9 1.9 1 23 429 452 429 452 0.96

11 11 1.6e-05 0.0018 20.3 3.8 1 23 466 488 466 488 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0032	0.37	13.0	5.7	1	23	173	195	173	195	0.99
2	11	1.9e-05	0.0021	20.0	0.5	1	23	201	223	201	223	0.99
3	11	0.00028	0.031	16.3	1.7	1	23	229	252	229	252	0.96
4	11	0.05	5.7	9.2	3.2	1	21	258	278	258	280	0.95
5	11	5.1e-05	0.0057	18.7	0.8	1	23	286	308	286	308	0.99
6	11	0.00011	0.013	17.6	3.3	1	23	314	336	314	336	0.98
7	11	0.00096	0.11	14.7	1.1	1	23	344	367	344	367	0.98
8	11	0.014	1.6	10.9	5.0	2	23	374	395	373	395	0.96
9	11	0.0015	0.17	14.1	2.1	1	23	401	423	401	423	0.98
10	11	2.3e-06	0.00026	22.9	1.9	1	23	429	452	429	452	0.96
11	11	1.6e-05	0.0018	20.3	3.8	1	23	466	488	466	488	0.95

Sequence Information

Coding Sequence: ATGCCGCCTCCTGATAAGAAGGCGGTATCAGATGGGAAACTGTTACAATCCTATCTGAACACCTACAGCACTTCGACTGAATCTCCTGCTGTCCTGGACTTGAACCGTGATGAGGAAGCGACCAGCAATGGAGTCACATACTTCGTGGACCAGGACGGCCGCTACTACTATCAACCGGGAGAAAATGAATCGATAATGTCACTGCCCACACCTGATAATGACGAGGGTCTGCCCGAGGAAGACGCTGCCGCCATGATGGAGGAGGGCTACCAGACCGTGACCCTGGTGCCCTCGGAGACTGGCTCCGGCGAGGTCAGCTATGTCCTCGTGGTGCAAGAGGAGACCAAGCCAGTGCTCAACGTGGACATCAAAGTGGACCAGGAGGAGGAAGAGGAGGACAAAGGCAATGAGGATGTATACACGTTCGAGGAGGAGGGTGTTGAAGAGGCCTccgaggaggaggaggaggcgGGCAAGCGCAAGAAGACGCCGAAGCGCCGGAACCAGCGCTCCAAGTTCACGTGCTCTTTCTGCAACTACATGAGCCACAGGCGTTACCTCCTCCTGCGGCACATGAAGACCCACTCCGAGGACCGACCCTACAAATGCAAGGTGTGCGAGCGCGGGTTCAAAACCGTGGCGTCGCTGCAGAACCACGTGAACATGCACAACGGCATCAAGCCGCACGTTTGCAAATACTGCAGCAGTCCCTTCACGACGTCAGGAGAACTGGTTCGGCACGTCCGCTACAAGCACACGCACGAGAAGCCCCACAAATGCTCTGAATGTGACTACGCCTCCGTGGAGCTTTCGAAGCTGCGGCGCCATGTACGGTGTCATACCGGCGAGCGGCCATACCAGTGTCCAGACTGCACATACGCCTCCCCAGACACATTCAAGTTGAAGCGGCACCTGCGCACACACACGGGCGAGAAGCCATACAAGTGCGACAGTTGCAACATGTGCTTCACGCAGTCGAACTCGCTCAAGGCGCACAAGCTCATACATAATGTGTCAGAAAAGCCCGTGTACCGATGCGAACTCTGCCCAGCCAAGTGCGGGCGCAAGACCGACCTGCGCATACACATACAGAAGCTACACACCGCGGACAAGCCTCTCAAGTGCAAGAGGTGCGGGAAATCGTTCCCCGACCGCTACTCCTGCAAGATGCACAGTAAGACTCACGAGGGTGAAAAGTGCTTCAAATGCGACCTCTGCCCGTACGCGTCTACGATGCTGCGCCACCTCAAGTCGCACATGCTCAAGCATACCGACGAGAAACCTTTCGTGTGCACCGAGTGTGACCAAAGCTTCcgTCAGAAGCAATTATTGCGACGGCACCAGAACTTGTACCACAATCCTGACTACGTGCCCAAGCCGCCGAAGGAGAAGACGCACGCTTGCCACGAGTGCAAGCGAACTTTCGCGCACAAGGGTAACCTCATCAGGCATTTGGCGATCCACGACCCGGACTCTGGCCACACGGAACGAGCGCTGGCCCTCAAGATCGGGCGGCAACGCAAGATCAAGTACATGACCCAACGCCAGGAGGAGCAAAACGAGTCCGACGACAACACGATGGTGAAGCTCGGGCTCACGAGCAACGAGCTCCGCCGCGGCGAGCTGGTCACCGTCGCGGACGGCGACGGGCAGCAGTACGTCGTGCTCGAAGTGATACAGCTGGAGGACGGCACCGAGCAGCACGTCGCCGTCGTGGCGCCGGAGTTCATCGAGTGCGAGGAGCCAGATGAAGAAGACGAAGACGATGAACAGGACCAAGAACCAATGGACACTCAGGAAGTGCGTCACAAGGATCCCATCATCGAGAAGAGCATCAAACTGGAGAAGGACGTCAACACCTGCTTCGGTTTTGACGAAGATGACGAGGGCGAAGGCGAAGAAGATTACGAAATGCTCGAGGCTCAAGGCTAG
Protein Sequence: MPPPDKKAVSDGKLLQSYLNTYSTSTESPAVLDLNRDEEATSNGVTYFVDQDGRYYYQPGENESIMSLPTPDNDEGLPEEDAAAMMEEGYQTVTLVPSETGSGEVSYVLVVQEETKPVLNVDIKVDQEEEEEDKGNEDVYTFEEEGVEEASEEEEEAGKRKKTPKRRNQRSKFTCSFCNYMSHRRYLLLRHMKTHSEDRPYKCKVCERGFKTVASLQNHVNMHNGIKPHVCKYCSSPFTTSGELVRHVRYKHTHEKPHKCSECDYASVELSKLRRHVRCHTGERPYQCPDCTYASPDTFKLKRHLRTHTGEKPYKCDSCNMCFTQSNSLKAHKLIHNVSEKPVYRCELCPAKCGRKTDLRIHIQKLHTADKPLKCKRCGKSFPDRYSCKMHSKTHEGEKCFKCDLCPYASTMLRHLKSHMLKHTDEKPFVCTECDQSFRQKQLLRRHQNLYHNPDYVPKPPKEKTHACHECKRTFAHKGNLIRHLAIHDPDSGHTERALALKIGRQRKIKYMTQRQEEQNESDDNTMVKLGLTSNELRRGELVTVADGDGQQYVVLEVIQLEDGTEQHVAVVAPEFIECEEPDEEDEDDEQDQEPMDTQEVRHKDPIIEKSIKLEKDVNTCFGFDEDDEGEGEEDYEMLEAQG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654560;
90% Identity: iTF_00773129;
80% Identity: -